Keywords: paralog processing, ascorbate, transcriptome reprogramming, root development, SWI3, GWAS, auxin signaling

Latest 46 Papers

SPOROCYTELESS/NOZZLE acts together with MADS-domain transcription factors to regulate an auxin-dependent network controlling the Megaspore Mother Cell development

Authors: Cavalleri, A., Astori, C., Manrique, S., Bruzzaniti, G., Smaczniak, C., Mizzotti, C., Ruiu, A., Spano, M., Movilli, A., Gregis, V., Xu, X., Kaufmann, K., Colombo, L.

Date: 2025-11-26 · Version: 2

DOI: 10.1101/2025.03.11.641985

Model Organism: Arabidopsis thaliana

megaspore mother cell SPL/NZZ MADS‑domain transcription factors auxin signaling regulatory network

Sphingolipid-driven interleaflet coupling orchestrates Rho-GTPase recruitment to nanodomains for signal activation in plants

Authors: Montrazi, M., Poitout, A., Depenveiller, C., Bayle, V., Nagano, M., Mamode Cassim, A., Jolivet, M.-D., Fiche, J.-B., Sarazin, C., Fouillen, L., Simon-Plas, F., Crowet, J.-M., Jaillais, Y., MONGRAND, S., Martiniere, A., BOUTTE, Y.

Date: 2025-11-07 · Version: 1

DOI: 10.1101/2025.11.06.686946

Model Organism: Arabidopsis thaliana

interleaflet coupling sphingolipids phosphatidylserine nanodomains ROP6 activation auxin signaling

Integrating image-based phenotyping and GWAS to map tolerance to Spittlebug nymphs in interspecific Urochloa grasses

Authors: Espitia-Buitrago, P., Perea, C., Mejia-Medina, J. C., Hernandez, L. M., Castiblanco, V., Ryan, C., De Vega, J. J., Jauregui, R. N.

Date: 2025-11-05 · Version: 1

DOI: 10.1101/2025.11.03.686394

Model Organism: Urochloa spp.

Urochloa spittlebug tolerance GWAS QTL image-based phenotyping

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Development alters genotype-environment interactions and shapes adaptation in Arabidopsis

Authors: Lawrence-Paul, E. H., Janakiraman, J., Lawrence-Paul, M. R., Ben-Zeev, R., Xu, Y., Penn, A., Lasky, J. R.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.05.13.653704

Model Organism: Arabidopsis thaliana

vegetative phase change drought adaptation genotype-by-environment interaction GWAS developmental trade‑offs

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

Cytosolic Ca2+ as a universal signal for rapid root growth regulation

Authors: Randuch, M., Kulich, I., Vladimirtsev, D., Huang, S., Hedrich, R., Friml, J.

Date: 2025-10-17 · Version: 1

DOI: 10.1101/2025.10.17.683082

Model Organism: Arabidopsis thaliana

root growth auxin signaling cytosolic calcium optogenetics rapid growth inhibition

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Ca2+ signature-dependent control of auxin sensitivity in Arabidopsis

Authors: Song, H., Baudon, A., Freund, M., Randuch, M., Pencik, A., Ondrej, N., He, Z., Kaufmann, K., Gilliham, M., Friml, J., Hedrich, R., Huang, S.

Date: 2025-10-05 · Version: 1

DOI: 10.1101/2025.10.04.680446

Model Organism: Arabidopsis thaliana

auxin signaling calcium signaling optogenetics Arabidopsis root cell division inhibition

Wild genes to the rescue: High-throughput genomics uncovers the wild source of broomrape resistance in sunflower

Authors: Sisou, D., Ziadne, H., Eizenberg-Weiss, M., Eizenberg, H., Hubner, S.

Date: 2025-09-16 · Version: 1

DOI: 10.1101/2025.09.14.676089

Model Organism: Helianthus annuus

Orobanche cumana Helianthus annuus GWAS k‑mer mapping resistance QTL

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