Keywords: paralog processing, ascorbate, transcriptomics, CO2-fixing enzyme, rice (Oryza sativa)

Latest 47 Papers

Zinc deficiency induces spatially distinct responses in roots and impacts ZIP12-dependent zinc homeostasis in Arabidopsis

Authors: Thiebaut, N., Persson, D. P., Sarthou, M., Stevenne, P., Bosman, B., Carnol, M., Fanara, S., Verbruggen, N., Hanikenne, M.

Date: 2025-06-30 · Version: 1

DOI: 10.1101/2025.06.26.661794

Model Organism: Arabidopsis thaliana

zinc deficiency root apical meristem ZIP12 transcriptomics ionomics

Inactivating a β1 subunit of SnRK1 promotes broad-spectrum disease resistance in rice

Authors: Yuan, G., Lu, X., Wang, X., Li, M., Wang, S., Huang, Z., Zhang, F., Zhang, X., Yang, J., Guo, H., Bhadauria, V., Zhu, W., Zhao, W., Peng, Y.-L.

Date: 2025-06-27 · Version: 1

DOI: 10.1101/2025.06.26.661071

Model Organism: Oryza sativa

SnRK1β1A broad‑spectrum susceptibility Gas2 effector rice (Oryza sativa)fungal disease resistance

Identification of an early-heading mutant in Indonesian native rice cultivar: 'Gemdjah Beton'

Authors: Nagalla, A. D., Morita, R., Ichida, H., Hayashi, Y., Shirakawa, Y., Sato, T., Fukuta, Y., Toriyama, K., Saito, H., Okumoto, Y., Abe, T.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.19.660500

Model Organism: Oryza sativa

early heading rice (Oryza sativa)Ghd7 Hd3a RFT1

Heritable Large Deletions Using Type I-E CRISPR-Cas3 in Rice

Authors: Saika, H., Hara, N., Yasumoto, S., Muranaka, T., Yoshimi, K., Mashimo, T., Toki, S.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.05.658196

Model Organism: Oryza sativa

Eco CRISPR-Cas3 large genomic deletions Agrobacterium-mediated transformation rice (Oryza sativa)droplet digital PCR

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

From lab to field: analyses of genome-edited bacterial blight resistant rice

Authors: Frommer, W. B., Loo, E. P., Huguet-Tapia, J. C., Selvaraj, M., Stiebner, M., Killing, B., Buchholzer, M., Schepler-Luu, V., Hartwig, T., Valdez Gutierrez, S., Rast-Somssich, M. I., Szurek, B., Tohme, J., Charraviaga, P., White, F. F., Yang, B.

Date: 2025-05-29 · Version: 1

DOI: 10.1101/2025.05.26.656110

Model Organism: Oryza sativa

bacterial blight SWEET promoter editing TAL effectors rice (Oryza sativa)biosafety assessment

Fine-tuning quantitative agronomic traits by manipulating gene copy number in rice

Authors: Nomura, C., Kanzaki, H., Kanzaki, E., Shimizu, M., Oikawa, K., Utsushi, H., Ito, K., Sugimura, Y., Terauchi, R., Abe, A.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.16.654416

Model Organism: Oryza sativa

copy number variation OsMADS18 CRISPR/Cas9 rice (Oryza sativa)agronomic trait improvement

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Comparative multi-omics profiling of Gossypium hirsutum and Gossypium barbadense fibers at high temporal resolution reveals key differences in polysaccharide composition and associated glycosyltransferases

Authors: Swaminathan, S., Lee, Y., Grover, C. E., DeTemple, M. F., Mugisha, A. S., Sichterman, L. E., Yang, P., Xie, J., Wendel, J. F., Szymanski, D. B., Zabotina, O. A.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650795

Model Organism: Multi-species

cotton fiber development polysaccharide composition glycome profiling transcriptomics glycosyltransferases

ERF transcription factor regulons underpin growth-defence trade-off under acute heat stress in rice seedlings

Authors: Nair, A. U., Vishwakarma, S., Guha, T., Kadumuri, R. V., Fritschi, F. B., Chavali, S., Allu, A. D.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.21.649784

Model Organism: Oryza sativa

heat stress Oryza sativa seedling transcriptomics ethylene responsive factors phytohormone treatment

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