Keywords: paralog processing, ascorbate, transcriptomics, ELF3, bread wheat, Agrobacterium-mediated transformation

Latest 49 Papers

Stable Inheritance of Transgene and Yellow Fluorescent Protein Gene Expression in Progeny of Transgenic Cacao (Theobroma cacao) Plants

Authors: Austin, G., Jones, J., Stevens, A., Zhang, E., Thompson, T., Gomez, M., Vrla, G., Oh, Y., Marelli, J.-P., Jones, C., Staskawicz, B., Cho, M.-J.

Date: 2025-12-09 · Version: 1

DOI: 10.64898/2025.12.09.692773

Model Organism: Theobroma cacao

cacao Agrobacterium-mediated transformation somatic embryo explants transgene inheritance fluorescent marker

High-frequency sorghum transformation toolkit enhances Cas9 efficiency and expands promoter-editing capability with SpRY

Authors: Shen, J., Aregawi, K., Anwar, S., Miller, T., Groover, E. D., Rajkumar, M., Savage, D. F., Lemaux, P. G.

Date: 2025-12-07 · Version: 2

DOI: 10.1101/2025.01.21.634149

Model Organism: Sorghum bicolor

Sorghum bicolor CRISPR/Cas9 Agrobacterium-mediated transformation SpRY (PAM‑flexible Cas9)high-efficiency genome editing

Evaluating effects of elevated and accelerated NPQ relaxation on yield, physiology and transcription in soybean

Authors: Singh, D., de Souza, A. P., Doran, L., Hansen, J., Burgess, S. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689310

Model Organism: Glycine max

photosynthetic efficiency elevated CO2 transgenic soybean VPZ construct transcriptomics

Binary vector origin predictably determines Agrobacterium-mediated transformation outcome across eukaryotic kingdom

Authors: Szarzanowicz, M., Busche, M., Dai, Z., Lapp, N., Geiselman, G., Jia, J., Waldburger, L., Liang, Y., Yuan, G., Duong, R., Hillson, N., Brunkard, J. O., Simmons, B. A., Gladden, J., Kim, J., Thompson, M., Shih, P.

Date: 2025-11-18 · Version: 1

DOI: 10.1101/2025.11.18.688525

Model Organism: Arabidopsis thaliana

Agrobacterium-mediated transformation origin of replication T-DNA insertion number transgene silencing binary vector design

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

Unravelling the intraspecific variation in drought responses in seedlings of European black pine (Pinus nigra J.F. Arnold)

Authors: Ahmad, M., Hammerbacher, A., Priemer, C., Ciceu, A., Karolak, M., Mader, S., Olsson, S., Schinnerl, J., Seitner, S., Schoendorfer, S., Helfenbein, P., Jakub, J., Breuer, M., Espinosa, A., Caballero, T., Ganthaler, A., Mayr, S., Grosskinsky, D. K., Wienkoop, S., Schueler, S., Trujillo-Moya, C., van Loo, M.

Date: 2025-10-21 · Version: 1

DOI: 10.1101/2025.10.20.683360

Model Organism: Pinus nigra

drought tolerance Pinus nigra metabolomics transcriptomics phenotyping

Improving Perennial Ryegrass Transformation Protocols with Developmental Regulators

Authors: Cors, J., Olson-Jenson, G., Watkins, E., Smanski, M.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.14.682379

Model Organism: Lolium perenne

genetically modified turfgrass Agrobacterium-mediated transformation WUSCHEL2 BABY BOOM perennial ryegrass

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

Authors: Kabir, A. H., Thapa, A., Ara Saiful, S. A., Talukder, S. K.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680589

Model Organism: Pisum sativum

Trichoderma afroharzianum T22 iron deficiency pea (Pisum sativum)transcriptomics root microbiome

Sorghum embryos undergoing B chromosome elimination express B-variants of mitotic-related genes

Authors: Bojdova, T., Hlouskova, L., Holusova, K., Svacina, R., Hribova, E., Ilikova, I., Thiel, J., Kim, G., Pleskot, R., Houben, A., Bartos, J., Karafiatova, M.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679447

Model Organism: Sorghum purpureosericeum

DNA elimination B chromosome Sorghum purpureosericeum kinetochore proteins transcriptomics

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