Keywords: paralog processing, ascorbate, transcriptomics, spatial transcriptomics, SWI3, phylogenetic analysis

Latest 61 Papers

The auxin gatekeepers: Evolution and diversification of the YUCCA family

Authors: Vijayanathan, M., Faryad, A., Abeywickrama, T. D., Christensen, J. M., Neilson, E. H.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.11.648386

YUCCA gene family indole-3-acetic acid phylogenetic analysis gene family diversification auxin biosynthesis

Welcome pathogens: transient heat dampens the responses to acibenzolar-S-methyl beyond defenses in apple plants

Authors: Chavonet, E., Nguyen, B.-h., Heintz, C., Cournol, R., Siroka, J., Novak, O., Larbat, R., Gaucher, M., Brisset, M.-N., Pantin, F., Degrave, A.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647103

Model Organism: Malus domestica

heat stress acibenzolar‑S‑methyl (ASM)induced immunity apple (Malus domestica)transcriptomics

Archaeological Bolivian maize genomes suggest Inca cultural expansion augmented maize diversity in South America

Authors: Chen, H., Baetsen-Young, A., Thompson, A., Day, B., Madzima, T., Wasef, S., Rivera Casanovas, C., Lovis, W., Wrobel, G.

Date: 2025-04-01 · Version: 1

DOI: 10.1101/2025.03.31.646424

Model Organism: Zea mays

ancient maize biocultural selection Inca agriculture phylogenetic analysis seed traits

Omics-driven Identification of Candidate Genes and SNP markers in a Major QTL Controlling Early Heading in Rice

Authors: Rao, D., T, N. S., CG, G., Gaur, N., Jamaloddin, M., Maganti, S. M., Raman, M. S., Patel, H. K., Tiwari, S., Sonti, R. V.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.25.645207

Model Organism: Oryza sativa

heading date rice (Oryza sativa)QTL-seq SNP markers transcriptomics

Multilevel analysis of response to plant growth promoting and pathogenic bacteria in Arabidopsis roots and the role of CYP71A27 in this response

Authors: Koprivova, A., Ristova, D., Berka, M., Berkova, V., Türksoy, G. M., Andersen, T. G., Westhoff, P., Cerny, M., Kopriva, S.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.26.645393

Model Organism: Arabidopsis thaliana

CYP71A27 plant‑microbe interaction Pseudomonas fluorescens CH267 Burkholderia glumeae PG1 transcriptomics

Pangenome insights into structural variation and functional diversification of barley CCT motif genes

Authors: Zhu, Z., Stein, N.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.19.643958

Model Organism: Hordeum vulgare

CCT motif genes barley pangenome gene family diversification VRN2 floral repressor phylogenetic analysis

The minimal cell-cycle control system in Marchantia as a framework for understanding plant cell proliferation

Authors: Romani, F., Bonter, I., Rebmann, M., Takahashi, G., Guzman-Chavez, F., De Batte, F., Hirakawa, Y., Haseloff, J.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.12.642684

Model Organism: Marchantia polymorpha

Cyclin-CDK regulation Marchantia polymorpha single-cell RNA sequencing phylogenetic analysis fluorescent reporter imaging

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

Transcriptomic insights into the role of miR394 in the regulation of flowering time in Arabidopsis thaliana

Authors: Belen, F., Bernardi, Y., Reutemann, A., Vegetti, A., Dotto, M. C.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.15.638417

Model Organism: Arabidopsis thaliana

miR394 flowering time Arabidopsis thaliana transcriptomics lncRNA

Phenotypic similarity of NAD(P)-Malic Enzymes in Tomato: Unveiling Patterns of Convergent and Parallel Evolution

Authors: Martinatto, A., Bohm, J. M., Bustamante, C., Pancaldi, F., Schranz, M. E., Tronconi, M.

Date: 2025-02-16 · Version: 1

DOI: 10.1101/2025.02.12.637823

Model Organism: Solanum lycopersicum

malic enzyme NADP-ME Solanum lycopersicum gene expression phylogenetic analysis

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