Keywords: paralog processing, ascorbate, yield, alternative splicing, transcriptome analysis, auxin signaling

Latest 40 Papers

Splicing regulation by RS2Z36 controls ovary patterning and fruit growth in tomato

Authors: Vraggalas, S., Rosenkranz, R. R., Keller, M., Perez-Perez, Y., Bachiri, S., Zehl, K., Bold, J., Simm, S., Ghatak, A., Weckwerth, W., Afjehi-Sadat, L., Chaturvedi, P., Testillano, P. S., Mueller-McNicoll, M., Zarnack, K., Fragkostefanakis, S.

Date: 2025-12-02 · Version: 2

DOI: 10.1101/2025.01.31.635986

Model Organism: Solanum lycopersicum (tomato)

RS2Z36 alternative splicing tomato fruit development ovary patterning proteome analysis

The structured mRNA element 45ABC mediates auto- and cross-regulation of RBP45 genes via alternative splicing

Authors: Reinhardt, M., Burgardt, R., Engel, C., Sack, M., Weinberg, Z., Wachter, A.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.25.690383

Model Organism: Arabidopsis thaliana

alternative splicing structured RNA motif RBP45 auto-regulation Arabidopsis thaliana

SPOROCYTELESS/NOZZLE acts together with MADS-domain transcription factors to regulate an auxin-dependent network controlling the Megaspore Mother Cell development

Authors: Cavalleri, A., Astori, C., Manrique, S., Bruzzaniti, G., Smaczniak, C., Mizzotti, C., Ruiu, A., Spano, M., Movilli, A., Gregis, V., Xu, X., Kaufmann, K., Colombo, L.

Date: 2025-11-26 · Version: 2

DOI: 10.1101/2025.03.11.641985

Model Organism: Arabidopsis thaliana

megaspore mother cell SPL/NZZ MADS‑domain transcription factors auxin signaling regulatory network

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.23.689882

Model Organism: Hordeum vulgare

Fusarium Head Blight drought stress barley hormone profiling transcriptome analysis

Sphingolipid-driven interleaflet coupling orchestrates Rho-GTPase recruitment to nanodomains for signal activation in plants

Authors: Montrazi, M., Poitout, A., Depenveiller, C., Bayle, V., Nagano, M., Mamode Cassim, A., Jolivet, M.-D., Fiche, J.-B., Sarazin, C., Fouillen, L., Simon-Plas, F., Crowet, J.-M., Jaillais, Y., MONGRAND, S., Martiniere, A., BOUTTE, Y.

Date: 2025-11-07 · Version: 1

DOI: 10.1101/2025.11.06.686946

Model Organism: Arabidopsis thaliana

interleaflet coupling sphingolipids phosphatidylserine nanodomains ROP6 activation auxin signaling

Aggressive nitrogen assimilation during exponential growth in Chlamydomonas reinhardtii

Authors: Tibule, M., Mallawarachchi, W., Oyateru, O., Ziaeian, M., Kim, M., Dharmasiri, H. N., Lee, J.-H.

Date: 2025-11-04 · Version: 1

DOI: 10.1101/2025.11.02.686124

Model Organism: Chlamydomonas reinhardtii

nitrogen use strategies Chlamydomonas reinhardtii nitrogen assimilation transcriptome analysis nitrogen storage

Impact of alternative splicing on Arabidopsis proteome

Authors: Reyes, A. V., Zhang, C., Karunadasa, S. S., Shrestha, R., Grismer, T. S., Byun, D., Xu, S.

Date: 2025-10-20 · Version: 3

DOI: 10.1101/2024.02.29.582853

Model Organism: Arabidopsis thaliana

alternative splicing isoform-specific peptides intron retention proteogenomics Arabidopsis thaliana

Maternal Light and Temperature Modulate Seed Longevity in Arabidopsis

Authors: Mazhari Azad, S., Gill Villar, D., Yordan, E., Mestre Pluvinet, P., Forment, J., Tarraga Herrero, S., Gonzalez, C., Ninoles Rodenes, R., Gadea, J.

Date: 2025-10-19 · Version: 1

DOI: 10.1101/2025.10.19.683148

Model Organism: Arabidopsis thaliana

seed longevity maternal environment effect Arabidopsis thaliana temperature and light interaction transcriptome analysis

Cytosolic Ca2+ as a universal signal for rapid root growth regulation

Authors: Randuch, M., Kulich, I., Vladimirtsev, D., Huang, S., Hedrich, R., Friml, J.

Date: 2025-10-17 · Version: 1

DOI: 10.1101/2025.10.17.683082

Model Organism: Arabidopsis thaliana

root growth auxin signaling cytosolic calcium optogenetics rapid growth inhibition

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

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