Keywords: paralog processing, codon usage, CO2-fixing enzyme, root microbiome

Latest 10 Papers

Turnip mosaic virus drives selective filtering and community reassembly in the Arabidopsis thaliana root microbiome in a genotype-specific manner

Authors: Cobos, A., Udaondo, Z., Gonzalo, I., Castrillo, G., Valli, A. A.

Date: 2025-12-11 · Version: 1

DOI: 10.64898/2025.12.11.693707

Model Organism: Arabidopsis thaliana

Turnip mosaic virus root microbiome Arabidopsis thaliana bacterial diversity co-occurrence network

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

Authors: Kabir, A. H., Thapa, A., Ara Saiful, S. A., Talukder, S. K.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680589

Model Organism: Pisum sativum

Trichoderma afroharzianum T22 iron deficiency pea (Pisum sativum)transcriptomics root microbiome

Melatonin enhances peanut productivity by enriching root-associated nitrogen fixing bacteria

Authors: Muhammad, A., Kong, X., Li, L., Khan, M. H. U., Jia, P., Miao, C., Zhang, Z.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669620

Model Organism: Arachis hypogaea

melatonin Arachis hypogaea root microbiome Proteobacteria enrichment seed treatment

Plant specialised metabolites modulate the molecular signatures of host-bacteria and bacteria-bacteria interactions

Authors: Rouyer, L., Becker, C., Schandry, N.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.06.658260

Model Organism: General

benzoxazinoids root microbiome plant‑soil chemical legacy bacterial‑plant interactions holobiont profiling

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Iron retention coupled with trade-offs in localized symbiotic effects confers tolerance to combined iron deficiency and drought in soybean

Authors: Hasan, M. R., Thapa, A., Kabir, A. H.

Date: 2025-03-24 · Version: 2

DOI: 10.1101/2025.01.02.631154

Model Organism: Glycine max

soybean (Glycine max)iron deficiency drought stress root microbiome multi‑omics

Meltome Atlas of Arabidopsis thaliana Proteome: A Melting Temperature-Based Identification of Heat & Cold Resistant Proteins

Authors: Mohanta, T. K., Mohanta, K. M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639691

Model Organism: Arabidopsis thaliana

thermal stability melting temperature (Tm)Arabidopsis thaliana proteome codon usage gene duplication

Transcriptional shifts and microbiome dynamics in sorghum roots during vegetative growth under drought stress

Authors: Kabir, A. H., Brailey-Jones, P., Abdelrahman, M., Legeay, J., Ahmed, B., Tran, L.-S. P., Bennetzen, J. L.

Date: 2025-02-15 · Version: 4

DOI: 10.1101/2024.07.19.604343

Model Organism: Sorghum bicolor

sorghum drought stress ferritin root microbiome LC-MS