Keywords: paralog processing, codon usage, Solanum lycopersicum

Latest 15 Papers

Decoding stage-specific symbiotic programs in the Rhizophagus irregularis-tomato interaction using single-nucleus transcriptomics

Authors: Stuer, N., Leroy, T., Eekhout, T., De Keyser, A., Staut, J., De Rybel, B., Vandepoele, K., Van Damme, P., Van Dingenen, J., Goormachtig, S.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.22.701092

Model Organism: Solanum lycopersicum

arbuscular mycorrhizal symbiosis single-nucleus RNA sequencing Solanum lycopersicum transcription factor network inference root cortical development

A Savory-based Formulation for Sustainable Management of Early Blight caused by Alternaria solani and Preservation of Tomato Fruit Quality

Authors: Lak, F., Omrani, A., Nikkhah, M. J., Gohari, A. M., Nicolaisen, M., Abuali, M., Ahmadzadeh, M.

Date: 2026-01-22 · Version: 1

DOI: 10.64898/2026.01.20.700539

Model Organism: Solanum lycopersicum

early blight Solanum lycopersicum savory essential oil biocompatible formulation fruit quality

Micro-C in Solanum Uncovers Conserved Genome Folding and Epigenetically Defined Loops with Bifunctional Enhancer-Silencer Activity

Authors: Filler-Hayut, S., Hansen, A. S.

Date: 2025-10-16 · Version: 1

DOI: 10.1101/2025.10.16.682740

Model Organism: Solanum lycopersicum

chromatin loops Micro-C Solanum lycopersicum Polycomb repression gene regulation

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Systematic analysis of lectin gene family reveals dynamic modes of paralogue evolution and immune regulatory functions in tomato

Authors: Shukla, V., George, A. P., Marthi, R. S. V., Sonawane, A. P., Parida, S., Ramireddy, E.

Date: 2025-08-01 · Version: 1

DOI: 10.1101/2025.07.29.667230

Model Organism: Solanum lycopersicum

Lectin gene family Solanum lycopersicum Genome duplication Virus-induced gene silencing Pathogen defense

Copper Stress Trigger Organelles Communication and Chromatin Condensation Leading to Cell Death in Solanum lycopersicum

Authors: Chouhan, S., Chandra, S., Salam, A., Nandi, C. K.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665307

Model Organism: Solanum lycopersicum

copper toxicity chromatin remodeling mitochondrial stress Solanum lycopersicum root apex

A Hierarchical Cascade of Organellar Silencing and their Regeneration under Anaesthetic Stress in Plants

Authors: Chandra, S., Chouhan, S., Mukherjee, B., Salam, A., Behera, L., Nandi, C. K.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.03.663012

Model Organism: Solanum lycopersicum

anaesthetic‑induced organelle damage mitochondrial and lysosomal function nuclear integrity plant cell recovery Solanum lycopersicum

Precision RNAi in Tomato Using Synthetic Trans-Acting Small Interfering RNAs Derived From Minimal Precursors

Authors: Tomassi, A. H., Juarez-Molina, M., Cisneros, A. E., Alarcia, A., Toledano, S., Orlando, F., Presa, S., Granell, A., Carbonell, A.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.10.648111

Model Organism: Solanum lycopersicum

RNA interference synthetic trans-acting siRNA minimal precursor virus-induced gene silencing Solanum lycopersicum

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

ELIP is preferentially expressed in stomatal guard cells and has a role in stomatal opening upon transition to light

Authors: Bednarczyk, D., Cohen, M., Kamara, I., Tiwari, V., Itafa, E. A., Regon, P., Savidor, A., Yadav, D., Belausov, E., Charuvi, D.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.26.645183

Model Organism: Solanum lycopersicum

early light‑induced proteins (ELIPs)Solanum lycopersicum guard cell stomatal conductance Venus fluorescent reporter photoprotection

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