Keywords: paralog processing, codon usage, climate adaptation

Latest 9 Papers

Evolutionary genomics of local adaptation, climate vulnerability, and linarin metabolism in Opisthopappus longilobus

Authors: Jing, R., Su, J., Song, A., Chen, W., Wang, M., Xue, J., Zhang, Y., Su, X., Wang, Y., Yu, Z., He, J., Ma, L., Zhang, F., Wang, H., Wang, Z., Chen, S., Fang, W., Jiang, J., Chen, F.

Date: 2026-01-22 · Version: 1

DOI: 10.64898/2026.01.20.700049

Model Organism: Opisthopappus longilobus

Opisthopappus chromosome-scale genome assembly population genomics climate adaptation genomic offset

Night temperature determines nearly half of wheat yield variation globally

Authors: Schulthess, U., Reynolds, M. P., Atkin, O., Giron, E., Asseng, S., Snapp, S.

Date: 2026-01-02 · Version: 1

DOI: 10.64898/2025.12.19.695361

Model Organism: Triticum aestivum

daily minimum temperature grain filling spring wheat yield nighttime respiration climate adaptation

A non-coding SNP in ELF3 alters expression of ELF3β and confers adaptation of Arabidopsis to a continental climate

Authors: Buckley, C. R., Fournier-Level, A., Haydon, M. J.

Date: 2025-10-24 · Version: 1

DOI: 10.1101/2025.10.23.684042

Model Organism: Arabidopsis thaliana

circadian clock EARLY FLOWERING 3 (ELF3)Arabidopsis natural variation genome-wide association study climate adaptation

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Unlocking Genetic Diversity in Colombian Cassava Landraces for Accelerated Breeding

Authors: Zhao, K., Long, E., Sanchez, F., Chavarriaga, P., Monroe, J. G.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.30.662420

Model Organism: Manihot esculenta

cassava genomic diversity landrace varieties loss-of-function mutations gene editing targets climate adaptation

Leaf shape modulates climate trait relationships in the wild species Chenopodium hircinum (Amaranthaceae)

Authors: Rodriguez, J., Quipildor, V., Giamminola, E., Bramardi, S., Jarvis, D., Maughan, J., Xu, J., Farooq, H., Ortega-Baes, P., Jellen, E., Tester, M., Bertero, D., Curti, R. N.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.21.649804

Model Organism: Chenopodium hircinum

leaf morphology phenotypic plasticity functional traits morphometric analysis climate adaptation

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

MYB59 is linked to natural variation of water use associated with warmer temperatures in Arabidopsis thaliana

Authors: Ferguson, J. N., Brendel, O., Bechtold, U.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.27.640580

Model Organism: Arabidopsis thaliana

water-use variation Arabidopsis thaliana climate adaptation GWAS MYB59

Meltome Atlas of Arabidopsis thaliana Proteome: A Melting Temperature-Based Identification of Heat & Cold Resistant Proteins

Authors: Mohanta, T. K., Mohanta, K. M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639691

Model Organism: Arabidopsis thaliana

thermal stability melting temperature (Tm)Arabidopsis thaliana proteome codon usage gene duplication