Keywords: paralog processing, codon usage, lateral root development, DDM1

Latest 12 Papers

The circadian clock gates lateral root development

Authors: Nomoto, S., Mamerto, A., Ueno, S., Maeda, A. E., Kimura, S., Mase, K., Kato, A., Suzuki, T., Inagaki, S., Sakaoka, S., Nakamichi, N., Michael, T. P., Tsukagoshi, H.

Date: 2026-01-15 · Version: 1

DOI: 10.64898/2026.01.14.699582

Model Organism: Arabidopsis thaliana

circadian clock ELF3 lateral root development hormonal signaling Arabidopsis thaliana

MAP70-2 is required for division plane orientation during 3D differential growth within a tissue

Authors: Winter, Z., Stöckle, D., Sasaki, T., Marc Martin, S., Oda, Y., Vermeer, J. E.

Date: 2026-01-08 · Version: 1

DOI: 10.64898/2026.01.07.697928

Model Organism: Arabidopsis thaliana

lateral root development MAP70-2 cell division orientation mechanical feedback Arabidopsis thaliana

Ethylene signal-driven plant-multitrophic synergy boosts crop performance

Authors: Baer, M., Zhong, Y., Yu, B., Tian, T., He, X., Gu, L., Huang, X., Gallina, E., Metzen, I. E., Bucher, M., Song, R., Gutjahr, C., SU, Z., Moya, Y., von Wiren, N., Zhang, L., Yuan, L., Shi, Y., Wang, S., Qi, W., Baer, M., Zhao, Z., Li, C., Li, X., Hochholdinger, F., Yu, P.

Date: 2025-11-29 · Version: 1

DOI: 10.1101/2025.11.28.690471

Model Organism: Zea mays

arbuscular mycorrhizal fungi lateral root development ethylene‑responsive transcription factors flavonoid metabolism Zea mays

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Spatiotemporal Dynamics of Anionic Phospholipids Orchestrate Lateral Root Initiation and Morphogenesis in Arabidopsis thaliana

Authors: Dubrovsky, J. G., Li, J., Bouziri, S., Bormann, E., Geiger, C., Reyes-Hernandez, J., Maizel, A.

Date: 2025-08-09 · Version: 1

DOI: 10.1101/2025.08.08.669267

Model Organism: Arabidopsis thaliana

lateral root development phosphoinositide signaling PI(4,5)P2 phosphatidylserine membrane lipid dynamics

Rational modulation of plant root development using engineered cytokinin regulators

Authors: Rattan, R., Alamos, S., Szarzanowicz, M., Markel, K., Shih, P. M.

Date: 2025-06-22 · Version: 2

DOI: 10.1101/2024.12.06.627221

Model Organism: Arabidopsis thaliana

synthetic biology Type‑B response regulators cytokinin signaling tissue‑specific promoters lateral root development

SlHSFB3a developmentally regulates lateral root formation by modulating auxin signaling in tomato.

Authors: Majee, A., Sairem, B., Kumar, V., Sane, A. P., Sane, V. A.

Date: 2025-04-18 · Version: 1

DOI: 10.1101/2025.04.15.648910

Model Organism: Solanum lycopersicum

HSF transcription factor SlHSFB3a auxin homeostasis lateral root development tomato

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

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