Keywords: paralog processing, codon usage, multi‑omics

Latest 7 Papers

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Multi-omics profiling with indoor-unmanned phenotyping reveals drought adaptation through constitutive ABF1 expression in wild rice

Authors: Soma, F., Kawahara, Y., Tanabata, T., Hayashi, A., Kitomi, Y., Kochi, N., Yamamoto, E., Tanaka, N., Negishi, M., Tokuda, K., Sakai, H., Uga, Y.

Date: 2025-09-12 · Version: 1

DOI: 10.1101/2025.09.08.674796

Model Organism: Oryza sativa

drought resistance ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)rice (Oryza sativa)wild rice relatives multi‑omics

Variations in the root-soil system influence the grapevine holobiont by shaping plant physiology and root microbiome

Authors: Guazzini, M., Marasco, R., Radovic, S., Pellegrini, E., Vuerich, M., Lodovici, A., De Wittenau, G. D., Paparelli, E., Magris, G., Zanin, L., Contin, M., De Luca, E., Daffonchio, D., Di Gaspero, G., Marroni, F.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.14.670050

Model Organism: Vitis vinifera

soil microbiome grapevine holobiont multi‑omics bacterial diversity leaf nutrient status

RBP47 family members are negative regulators of heat stress tolerance in Arabidopsis thaliana

Authors: Hernandez-Sanchez, I. E., Tarbiyyah, I., Kearly, A., Martinez-Seidel, F., Maruri-Lopez, I., Chen, Y., S. Rissland, O., Wang, W., Sioud, S., Schwarzenberg, A., Nelson Dittrich, A. C., Nelson, A., Chodasiewicz, M.

Date: 2025-05-19 · Version: 1

DOI: 10.1101/2025.05.18.654719

Model Organism: Arabidopsis thaliana

stress granules thermotolerance RBP47 proximity labeling multi‑omics

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Iron retention coupled with trade-offs in localized symbiotic effects confers tolerance to combined iron deficiency and drought in soybean

Authors: Hasan, M. R., Thapa, A., Kabir, A. H.

Date: 2025-03-24 · Version: 2

DOI: 10.1101/2025.01.02.631154

Model Organism: Glycine max

soybean (Glycine max)iron deficiency drought stress root microbiome multi‑omics

Meltome Atlas of Arabidopsis thaliana Proteome: A Melting Temperature-Based Identification of Heat & Cold Resistant Proteins

Authors: Mohanta, T. K., Mohanta, K. M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639691

Model Organism: Arabidopsis thaliana

thermal stability melting temperature (Tm)Arabidopsis thaliana proteome codon usage gene duplication