Keywords: paralog processing, codon usage, principal component analysis, ascorbate

Latest 7 Papers

Stage-specific screening reveals complex resilience pathways to cold stress in rice

Authors: Akter, F., BISWAS, P. S., Islam, A. A., Raihan, M. S., Rahman, M. M., Iftekharuddaula, K. M., Islam, M. R., Platten, J. D.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.23.690040

Model Organism: Oryza sativa

cold stress rice germplasm seedling-stage tolerance reproductive-stage tolerance principal component analysis

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Gravity-Dependent Metabolomic Responses in Starbor Kale Brassica oleracea: Comparisons With Simulated Microgravity Versus Gravity Grown

Authors: Osano, A., Yan, J., Ude, G., Ray, S., Peng, J., Li, Y., Iro, A.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.29.679261

Model Organism: Brassica oleracea (kale)

simulated microgravity kale LC‑MS metabolomics principal component analysis gravity-induced metabolic adaptation

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Meltome Atlas of Arabidopsis thaliana Proteome: A Melting Temperature-Based Identification of Heat & Cold Resistant Proteins

Authors: Mohanta, T. K., Mohanta, K. M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639691

Model Organism: Arabidopsis thaliana

thermal stability melting temperature (Tm)Arabidopsis thaliana proteome codon usage gene duplication

Variation analysis of fruit phenotypic traits of different provenances of ancient Cinnamomum camphora in Jiangxi Province of China

Authors: Zhao, J., Wan, S.

Date: 2025-02-12 · Version: 1

DOI: 10.1101/2025.02.12.637828

Model Organism: Cinnamomum camphora

Cinnamomum camphora fruit phenotypic variation provenance differentiation principal component analysis geographic and climatic correlation