Keywords: paralog processing, codon usage, transcriptome reprogramming, chlorophyll fluorescence

Latest 10 Papers

Optimizing light environment enables speed breeding in forage legumes: physiological limits and generation time reduction in Medicago sativa and Medicago truncatula

Authors: Berais-Rubio, A., Couture, C., Rodriguez-Briosso, M., Signorelli, S.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.20.700577

Model Organism: Medicago sativa

speed breeding Medicago sativa photoperiod optimization photosynthetic plasticity chlorophyll fluorescence

Extracellular electron transport in coral-algal symbiosis studied by chlorophyll fluorescence relaxation and ferricyanide reduction

Authors: Aslam, S. M., Patil, P. P., Kovacs, S., Larkum, A. W. D., Szabo, M., Vass, I.

Date: 2025-11-28 · Version: 1

DOI: 10.1101/2025.11.26.690407

Model Organism: Fugacium kawagutii

extracellular electron transport coral-algal symbiosis chlorophyll fluorescence redox balancing Symbiodiniaceae

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

The transcriptional mechanism behind Mimosa pudica leaf-folding in response to mechanical disturbance

Authors: Buti, M., Checcucci, A., Vergata, C., Renna, L., Pollastri, S., Loreto, F., Mancuso, S., Martinelli, F.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665295

Model Organism: Mimosa pudica

Mimosa pudica mechanical stress chlorophyll fluorescence transcriptomics stress‑responsive gene expression

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Foliar gas exchange, morphology, and cannabinoid contents of three hemp varieties in southwest Texas

Authors: Sebastian, J. S. V., Dong, X., Joshi, M. V., Jessup, R. W., Leskovar, D. I., Baltensperger, D. D.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.09.642247

Model Organism: Cannabis sativa

Cannabis sativa hemp varieties THC content gas exchange chlorophyll fluorescence

Meltome Atlas of Arabidopsis thaliana Proteome: A Melting Temperature-Based Identification of Heat & Cold Resistant Proteins

Authors: Mohanta, T. K., Mohanta, K. M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639691

Model Organism: Arabidopsis thaliana

thermal stability melting temperature (Tm)Arabidopsis thaliana proteome codon usage gene duplication

Constitutive and regulatory responses of Arabidopsis thaliana to harmonically oscillating light

Authors: Niu, Y., Fuente, D., Matsubara, S., Lazar, D., Nedbal, L.

Date: 2025-02-08 · Version: 1

DOI: 10.1101/2025.02.07.637059

Model Organism: Arabidopsis thaliana

chlorophyll fluorescence oscillating light non‑photochemical quenching (qE)hysteresis Arabidopsis thaliana