Keywords: paralog processing, comparative transcriptomics, RNA sequencing

Latest 17 Papers

Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.22.701169

Model Organism: Multi-species

heat stress wheat ploidy RNA sequencing differential gene expression alternative splicing

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2

DOI: 10.64898/2025.12.16.694548

Model Organism: Brassica napus

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

Time- and space-resolved regulatory circuits in Arabidopsis thaliana

Authors: Zenker, S., Schiller, K., Braeutigam, A.

Date: 2025-10-24 · Version: 1

DOI: 10.1101/2025.10.23.684094

Model Organism: Arabidopsis thaliana

intermediate regulatory proteins temporal expression dynamics Arabidopsis thaliana RNA sequencing circadian regulation

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Transcriptional response to warm temperatures is confounded by organ-specificity

Authors: Hua, J., Gupta, S., Reis, R. S.

Date: 2025-08-06 · Version: 1

DOI: 10.1101/2025.08.05.668523

Model Organism: Arabidopsis thaliana

thermomorphogenesis organ-specific transcription RNA sequencing Differential gene expression Proteomics

Nucleotide sequence analysis reveals the presence of PVY-Tam isolates affecting tamarillo in Colombia

Authors: Martinez-Moncayo, C., Burbano-Lagos, T. C., Ontanon, C., Ferriol, I., Lopez-Moya, J. J., Uranga, M.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.18.664922

Model Organism: Solanum betaceum

Tamarillo (Solanum betaceum)virome Torradovirus Potato virus Y (PVY‑Tam)RNA sequencing

Transcriptomic stress responses in Vaccinium spp. F1 hybrids: Implications for temperature-resilient cranberry breeding using a crop wild relative

Authors: Dickinson, A., Kubal, J., Allsing, N., Murray, E. R., Michael, T. P., Polashock, J. J.

Date: 2025-07-11 · Version: 1

DOI: 10.1101/2025.07.08.662648

Model Organism: Vaccinium macrocarpon

Vaccinium macrocarpon V. oxycoccos cold stress RNA sequencing introgression breeding

Transcriptomic analysis of genotypes derived from Rosa wichurana unveils molecular mechanisms associated with quantitative resistance to Diplocarpon rosae

Authors: Lambelin, L., Thouroude, T., Jeauffre, J., Chameau, J., Vilfroy, C., Boursier, C., Aubourg, S., Pelletier, S., Lopez Arias, D. C., Hibrand-Saint Oyant, L., Soufflet-Freslon, V., Foucher, F., Paillard, S.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.13.659350

Model Organism: Rosa

black spot disease Diplocarpon rosae quantitative trait loci RNA sequencing plant defense response

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