Keywords: paralog processing, comparative transcriptomics, Vitis vinifera

Latest 21 Papers

Dual single-nucleus gene expression atlas of grapevine and Erysiphe necator during early powdery mildew infection

Authors: Bonarota, M. S., Garcia, J., Massonnet, M., Zaccheo, M., Figueroa-Balderas, R., Cochetel, N., Cantu, D.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669584

dual‑organism single‑nucleus transcriptomics Vitis vinifera Erysiphe necator cell‑type specific defense weighted gene co‑expression network analysis

The unfolded protein response in grapevine: abiotic and biotic stresses induce the expression of VvbZIP60, VvbZIP17, VvBIP3, and VvIRE1

Authors: Marzari, T., Blanchard, C., Poilvert, E., Palavioux, K., Klinger, A., Henry, A., Martinez, A., Poinssot, B., Gayral, M.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669611

Model Organism: Vitis vinifera

Vitis vinifera unfolded protein response IRE1/bZIP60 bZIP17 stress signaling

Nitrogen nutrition impacts grapevine esca leaf symptom incidence, physiology and metabolism

Authors: DellAcqua, N., Gambetta, G. A., Comont, G., Ferrer, N., Rochepeau, A., Petriacq, P., Delmas, C. E. L.

Date: 2025-04-29 · Version: 2

DOI: 10.1101/2024.08.31.610625

Model Organism: Vitis vinifera L. cv. Sauvignon blanc

nitrogen nutrition esca disease Vitis vinifera plant physiology leaf metabolomics

2-Oxoglutarate-dependent dioxygenases contribute to cardenolide biosynthesis in Erysimum cheiranthoides (wormseed wallflower)

Authors: Younkin, G., Holland, C. K., Jander, G.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.10.648230

Model Organism: Erysimum cheiranthoides

cardenolide biosynthesis 2‑oxoglutarate‑dependent dioxygenases hydroxylation comparative transcriptomics enzyme modeling

Comparative transcriptomics uncovers plant and fungal genetic determinants of mycorrhizal compatibility

Authors: Marques-Galvez, J. E., de Freitas Pereira, M., Nehls, U., Ruytinx, J., Barry, K., Peter, M., Martin, F., Grigoriev, I. V., Veneault-Fourrey, C., Kohler, A.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.11.648352

Model Organism: Populus

ectomycorrhizal symbiosis poplar comparative transcriptomics gene regulons compatibility

High radiosensitivity in the conifer Norway spruce (Picea abies) due to lesscomprehensive mobilisation of protection and repair responses compared to the radiotolerant Arabidopsis thaliana

Authors: Bhattacharjee, P., Blagojevic, D., Lee, Y., Gillard, G. B., Gronvold, L., Hvidsten, T. R., Sandve, S. R., Lind, O. C., Salbu, B., Brede, D. A., Olsen, J. E.

Date: 2025-04-14 · Version: 3

DOI: 10.1101/2023.11.20.562501

Model Organism: Multi-species

ionising radiation radiosensitivity comparative transcriptomics DNA damage repair antioxidant response

Transcriptional plasticity of fast core chromosomes governs establishment of a fungal pathogen on evolutionarily distant plant lineages

Authors: Srivastava, V., Kaushik L S, S., Pullagurla, N. J., Zechmann, B., Di Pietro, A., Laha, D., Redkar, A.

Date: 2025-03-28 · Version: 1

DOI: 10.1101/2025.03.27.645276

Model Organism: Marchantia polymorpha

Fusarium oxysporum Marchantia polymorpha effector genes fast core chromosomes comparative transcriptomics

Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana

Authors: Nowak, M. S., Harder, B., Meckoni, S. N., Friedhoff, R., Wolff, K., Pucker, B.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.06.15.599162

Model Organism: Victoria cruziana

Victoria cruziana flower color change anthocyanin biosynthesis comparative transcriptomics genome assembly

Herbaria provide a valuable resource for obtaining informative mRNA

Authors: Tyszka, A. S., Chia, K.-S., Bretz, E. C., Mansour, L., Larson, D. A., Carella, P., Walker, J. F.

Date: 2025-02-17 · Version: 1

DOI: 10.1101/2025.02.12.637878

Model Organism: General

archival RNA herbarium transcriptomics transcriptome assembly plant immune receptor comparative transcriptomics

Smoke exposure triggers rapid transcriptional changes and reveals glycosyltransferases linked to smoke taint in ripening grape berries

Authors: Paineau, M., Liang, C., Cochetel, N., Sharma, S., Figueroa-Balderas, R., Thilmony, R., Rumbaugh, A., Cantu, D.

Date: 2025-02-14 · Version: 1

DOI: 10.1101/2025.02.11.637658

Model Organism: Vitis vinifera

smoke taint Vitis vinifera glycosyltransferases HiFi long‑read sequencing gene co‑expression network

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