Keywords: paralog processing, comparative transcriptomics, ascorbate, local adaptation

Latest 18 Papers

High radiosensitivity in the conifer Norway spruce (Picea abies) due to lesscomprehensive mobilisation of protection and repair responses compared to the radiotolerant Arabidopsis thaliana

Authors: Bhattacharjee, P., Blagojevic, D., Lee, Y., Gillard, G. B., Gronvold, L., Hvidsten, T. R., Sandve, S. R., Lind, O. C., Salbu, B., Brede, D. A., Olsen, J. E.

Date: 2025-04-14 · Version: 3

DOI: 10.1101/2023.11.20.562501

Model Organism: Multi-species

ionising radiation radiosensitivity comparative transcriptomics DNA damage repair antioxidant response

Extensive photophysiological variation in wild barley is linked to environmental origin

Authors: Breil-Aubert, M., Shaw, K., Royles, J., Rodrigues Gabriel Sales, C., Walter, J., Taylor, G., Vath, R., Bdolach, E., Dev Tiwari, L., Mathan, J., Lawson, T., Fridman, E., Kromdijk, J., Ferguson, J. N.

Date: 2025-03-31 · Version: 1

DOI: 10.1101/2025.03.28.645825

Model Organism: Hordeum vulgare

crop wild relatives photophysiology genome-wide association study local adaptation stomatal conductance

Transcriptional plasticity of fast core chromosomes governs establishment of a fungal pathogen on evolutionarily distant plant lineages

Authors: Srivastava, V., Kaushik L S, S., Pullagurla, N. J., Zechmann, B., Di Pietro, A., Laha, D., Redkar, A.

Date: 2025-03-28 · Version: 1

DOI: 10.1101/2025.03.27.645276

Model Organism: Marchantia polymorpha

Fusarium oxysporum Marchantia polymorpha effector genes fast core chromosomes comparative transcriptomics

Phytochrome A is required for light-inhibited germination of Aethionema arabicum seed

Authors: Merai, Z., Xu, F., Hajdu, A., Kozma-Bognar, L., Dolan, L.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.26.640300

Model Organism: Aethionema arabicum

negative photoblastic germination phytochrome A Aethionema arabicum high‑irradiance response local adaptation

Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana

Authors: Nowak, M. S., Harder, B., Meckoni, S. N., Friedhoff, R., Wolff, K., Pucker, B.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.06.15.599162

Model Organism: Victoria cruziana

Victoria cruziana flower color change anthocyanin biosynthesis comparative transcriptomics genome assembly

Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan

Authors: Ujino-Ihara, T., Uchiyama, K., Kanetani, S., Suyama, Y., Tsumura, Y.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639673

Model Organism: Cryptomeria japonica

local adaptation transcriptome analysis weighted gene co‑expression network analysis (WGCNA)SNP differentiation defense response genes

Remote sensing reveals inter- and intraspecific variation in riparian cottonwood (Populus spp) response to drought

Authors: Seeley, M., Wiebe, B. C., Gehring, C. A., Hultine, K., Posch, B. C., Cooper, H. F., Schaefer, E. A., Bock, B. M., Abraham, A. J., Moran, M. E., Keith, A., Allan, G. J., Scull, M., Whitham, T. G., Martin, R. E., Asner, G. P., Doughty, C.

Date: 2025-02-19 · Version: 1

DOI: 10.1101/2025.02.17.638728

Model Organism: Populus fremontii

drought response leaf-level VSWIR spectroscopy UAV thermal imaging genotype-by-environment interaction local adaptation

Herbaria provide a valuable resource for obtaining informative mRNA

Authors: Tyszka, A. S., Chia, K.-S., Bretz, E. C., Mansour, L., Larson, D. A., Carella, P., Walker, J. F.

Date: 2025-02-17 · Version: 1

DOI: 10.1101/2025.02.12.637878

Model Organism: General

archival RNA herbarium transcriptomics transcriptome assembly plant immune receptor comparative transcriptomics

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