Keywords: paralog processing, comparative transcriptomics, metabolomics, GWAS

Latest 48 Papers

Adaptive Strategies of the invasive aquatic plant, Ludwigia grandiflora subps. hexapetala: Contrasting Plasticity Between Aquatic and Terrestrial Morphotypes.

Authors: Genitoni, J., Vassaux, D., RENAULT, D., Maury, S., BARLOY, D. H.

Date: 2025-09-01 · Version: 1

DOI: 10.1101/2025.08.27.672630

Model Organism: Ludwigia grandiflora subsp. hexapetala

phenotypic plasticity Ludwigia grandiflora invasive species metabolomics phytohormones

An Axiom SNP genotyping array for potato: development, evaluation and applications

Authors: Baig, N., Thelen, K., Ayenan, M. A. T., Hartje, S., Obeng-Hinneh, E., Zgadzaj, R., Renner, J., Muders, K., Truberg, B., Rosen, A., Prigge, V., Bruckmueller, J., Luebeck, J., Van Inghelandt, D., Stich, B.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670748

Model Organism: Solanum tuberosum

high-density SNP array potato (Solanum tuberosum)genomic-assisted breeding GWAS polyphenol oxidase activity

Identification of a novel link connecting indole-3-acetamide with abscisic acid biosynthesis and signaling

Authors: Moya-Cuevas, J., Ortiz-Garcia, P., Gonzalez Ortega-Villizan, A., Viguera-Leza, I., Perez-Gonzalez, A., Paz-Ares, J., Alonso-Blanco, C., Vicente-Carbajosa, J., Pollmann, S.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.15.670611

Model Organism: Arabidopsis thaliana

indole-3-acetamide (IAM)abscisic acid (ABA) signaling Arabidopsis thaliana GWAS hormone crosstalk

Stress-dependent responses of grapevine wood and fungal pathogen activity under esca and drought

Authors: Chambard, M., Cantu, D., Bortolami, G., Dell'Acqua, N., Ferrer, N., Gambetta, G., Garcia, J., Gastou, P., Massonnet, M., Moretti, S., Rochepeau, A., Petriacq, P., Foulongne-Oriol, M., Delmas, C. E. L.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.05.668645

Model Organism: Vitis vinifera

drought stress esca disease grapevine (Vitis vinifera)wood metatranscriptomics metabolomics

Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut

Authors: Sagar, U. N., Parmar, S., Gangurde, S. S., Sharma, V., Pandey, A. K., Mohinuddin, D. K., Dube, N., Bhat, R. S., John, K., Sreevalli, M. D., Rani, P. S., Singh, K., Varshney, R. K., Pandey, M. K.

Date: 2025-08-05 · Version: 1

DOI: 10.1101/2025.08.04.668427

Model Organism: Arachis hypogaea

groundnut nutritional quality GWAS SNP markers KASP

Drought and methyl jasmonate memory interact to determine plant functioning under current drought stress in a perennial grass

Authors: Bhatt, T., Rathore, N., Semerad, J., Cajthaml, T., Thakur, D., Munzbergova, Z.

Date: 2025-08-03 · Version: 1

DOI: 10.1101/2025.08.03.668340

Model Organism: Festuca rubra

drought memory methyl jasmonate Festuca rubra transgenerational priming metabolomics

Integrative genomic and transcriptomic analyses uncover regulatory landscape of symbiotic nitrogen fixation in soybean natural population

Authors: Li, Y., Feng, w., Feng, X., Liu, X., Hao, S., Lian, L., Gao, L., Shao, Y., Chen, H., Chen, Z., Yuan, J., Qin, L., Li, X., Li, X., Wang, X.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.18.665310

Model Organism: Glycine max

symbiotic nitrogen fixation GWAS TWAS eQTL mapping ATAC-seq

Novel production of structurally diverse and sticky defense metabolites on wild tomatillo fruits

Authors: Nowack, L., Deanna, R., Smith, S. D., Schenck, C. A.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.16.665232

Model Organism: Physalis

acylsugars Physalis metabolomics acyltransferase (ASAT1)fruit surface chemistry

Integrative Multi-Omics Analysis Reveals Stress-Specific Molecular Architectures in Soybean under Drought and Rust Infection

Authors: Husein, G., Castro-Moretti, F. R., Prado, M., Amorim, L., Mazzafera, P., Canales, J., Monteiro-Vitorello, C. B.

Date: 2025-07-08 · Version: 1

DOI: 10.1101/2025.07.07.663534

Model Organism: Glycine max

Asian soybean rust drought stress transcriptomics metabolomics co-expression network

Introducing furanocoumarin biosynthetic genes in tomato results in coumarins accumulation and impacted growth

Authors: Bouille, A., Villard, C., Galati, G., Roumani, M., Fauvet, A., Grosjean, J., Hoengenaert, L., Boerjan, W., Ralph, J., Hilliou, F., Robin, C., Hehn, A., Larbat, R.

Date: 2025-07-08 · Version: 1

DOI: 10.1101/2025.07.07.663522

Model Organism: Solanum lycopersicum

metabolic engineering linear furanocoumarin pathway coumarins tomato metabolomics

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