Keywords: paralog processing, comparative transcriptomics, pattern‑triggered immunity

Latest 18 Papers

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2

DOI: 10.64898/2025.12.16.694548

Model Organism: Brassica napus

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

The Ralstonia solanacearum E3 ligase effector RipV1 targets subfamily IXb receptor-like cytoplasmic kinases that negatively regulate immunity in Nicotiana benthamiana.

Authors: Choi, J., Dharmasena, T., Lee, Y., Monaghan, J., Segonzac, C.

Date: 2025-07-24 · Version: 1

DOI: 10.1101/2025.07.21.665888

Model Organism: Nicotiana benthamiana

pattern‑triggered immunity receptor‑like cytoplasmic kinases ubiquitin ligase activity Ralstonia solanacearum effector RipV1 virus‑induced gene silencing

β-sheet stabilization of the island domain underlies ligand-induced LRR-RP activation of plant immune signaling

Authors: Snoeck, S., Zhang, L., Studer, V., Kim, G., Fernandez-Fernandez, A. D., Nuernberger, T., zipfel, c.

Date: 2025-07-09 · Version: 1

DOI: 10.1101/2025.07.07.663532

Model Organism: Arabidopsis thaliana

LRR receptor proteins pattern‑triggered immunity AI‑based structural prediction island domain loopout Arabidopsis thaliana

Salicylic acid accumulation correlates with low anthocyanin production in Arabidopsis

Authors: Drs, M., Iakovenko, O., Orozco, J. S. H., Trhlinova, P. B., Markovice, V., Zarsky, V., Pecenkova, T., Janda, M.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658514

Model Organism: Arabidopsis thaliana

salicylic acid anthocyanin biosynthesis Arabidopsis thaliana pattern‑triggered immunity anthocyanin vesicular inclusions

New alleles of Arabidopsis BIK1 reinforce its predominant role in pattern-triggered immunity and caution interpretations of other reported functions

Authors: Song, B., Choi, S., Kong, L., Kim, S.-I., Fliegmann, J., Li, X., DeFalco, T. A., Hu, M., Li, M., Zhao, Y., Wang, H., Shan, L., Nuernberger, T., He, P., zipfel, c., Zhou, J.-M.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.02.657414

Model Organism: Arabidopsis thaliana

BIK1 PBL1 pattern‑triggered immunity CRISPR‑Cas9 gene editing T‑DNA insertion mutants

MIK2 clade receptor function in perception of a Fusarium-derived elicitor is conserved among different plant families

Authors: Maroschek, J., Roesgen, Y., Roessner, C., Snoeck, S., Schwechheimer, C., Zipfel, C., Hueckelhoven, R.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.22.655486

Model Organism: Arabidopsis thaliana

pattern‑triggered immunity MIK2 receptor kinase Fusarium elicitor SCOOP peptides evolutionary conservation

STT3A is required for recognition of pathogen-derived sphingolipids in Arabidopsis

Authors: Choi, S., Shimizu, M., Abe, A., Ishihama, N., Ishikawa, Y., Takemoto, D., Shirasu, K., Takano, Y., Terauchi, R., Kato, H.

Date: 2025-05-19 · Version: 1

DOI: 10.1101/2025.05.18.654772

Model Organism: Arabidopsis thaliana

pattern‑triggered immunity ceramide D (Pi‑Cer D)STT3A oligosaccharyltransferase NCER2 ceramidase Lumi‑Map screening

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