Keywords: paralog processing, comparative transcriptomics, subfunctionalization, circadian clock

Latest 21 Papers

Utilization of Arabidopsis E3 ubiquitin decoys high-throughput yeast screen platform to dissect the ubiquitin-mediated circadian clock regulation

Authors: Tu, Y.-T., Chen, C.-A., Gendron, J., Lee, C.-M.

Date: 2025-09-01 · Version: 1

DOI: 10.1101/2025.08.31.673341

Model Organism: Arabidopsis thaliana

protein ubiquitination E3 ubiquitin ligases yeast two-hybrid circadian clock Arabidopsis thaliana

TOC1 supresses PAMP-triggered immunity in Arabidopsis

Authors: Fraser, O. J. P., Spoel, S. H., van Ooijen, G.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.16.665052

Model Organism: Arabidopsis thaliana

circadian clock PAMP-triggered immunity flg22 TOC1 overexpression Arabidopsis thaliana

A Circadian Light Regulator Controls a Core CAM Gene in the Ice Plant's C3-to-CAM Transition

Authors: Perron, N., Le, T., Dervinis, C., Pereira, W. J., Barbazuk, W. B., Kirst, M.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.03.652029

Model Organism: Mesembryanthemum crystallinum

Crassulacean acid metabolism single-nucleus RNA sequencing PPCK1 HY5 transcription factor circadian clock

2-Oxoglutarate-dependent dioxygenases contribute to cardenolide biosynthesis in Erysimum cheiranthoides (wormseed wallflower)

Authors: Younkin, G., Holland, C. K., Jander, G.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.10.648230

Model Organism: Erysimum cheiranthoides

cardenolide biosynthesis 2‑oxoglutarate‑dependent dioxygenases hydroxylation comparative transcriptomics enzyme modeling

Comparative transcriptomics uncovers plant and fungal genetic determinants of mycorrhizal compatibility

Authors: Marques-Galvez, J. E., de Freitas Pereira, M., Nehls, U., Ruytinx, J., Barry, K., Peter, M., Martin, F., Grigoriev, I. V., Veneault-Fourrey, C., Kohler, A.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.11.648352

Model Organism: Populus

ectomycorrhizal symbiosis poplar comparative transcriptomics gene regulons compatibility

High radiosensitivity in the conifer Norway spruce (Picea abies) due to lesscomprehensive mobilisation of protection and repair responses compared to the radiotolerant Arabidopsis thaliana

Authors: Bhattacharjee, P., Blagojevic, D., Lee, Y., Gillard, G. B., Gronvold, L., Hvidsten, T. R., Sandve, S. R., Lind, O. C., Salbu, B., Brede, D. A., Olsen, J. E.

Date: 2025-04-14 · Version: 3

DOI: 10.1101/2023.11.20.562501

Model Organism: Multi-species

ionising radiation radiosensitivity comparative transcriptomics DNA damage repair antioxidant response

Transcriptional plasticity of fast core chromosomes governs establishment of a fungal pathogen on evolutionarily distant plant lineages

Authors: Srivastava, V., Kaushik L S, S., Pullagurla, N. J., Zechmann, B., Di Pietro, A., Laha, D., Redkar, A.

Date: 2025-03-28 · Version: 1

DOI: 10.1101/2025.03.27.645276

Model Organism: Marchantia polymorpha

Fusarium oxysporum Marchantia polymorpha effector genes fast core chromosomes comparative transcriptomics

TOC1 phosphorylation disproportionally enhances chromatin binding at rhythmic gene promoters

Authors: Yan, J., Zhang, Y., Chen, G., Gui, C., Tu, Z., Cao, D., Li, X., Somers, D. E.

Date: 2025-03-27 · Version: 2

DOI: 10.1101/2025.01.09.632189

Model Organism: Arabidopsis thaliana

TOC1 phosphorylation circadian clock Arabidopsis thaliana CCA1 repression chromatin occupancy

Antioxidant properties of dihydroxy B-ring flavonoids modulate circadian amplitude in Arabidopsis

Authors: Littleton, E. S., Hildreth, S. B., Kojima, S., Winkel, B. S. J.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.09.641856

Model Organism: Arabidopsis thaliana

flavonoids circadian clock reactive oxygen species TOC1:LUC reporter chloroplast calcium signaling

Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana

Authors: Nowak, M. S., Harder, B., Meckoni, S. N., Friedhoff, R., Wolff, K., Pucker, B.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.06.15.599162

Model Organism: Victoria cruziana

Victoria cruziana flower color change anthocyanin biosynthesis comparative transcriptomics genome assembly

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