Keywords: paralog processing, comparative transcriptomics, transcriptomics, Arabidopsis thaliana

Latest 282 Papers

Cooperation between a root fungal endophyte and host-derived coumarin scopoletin mediates Arabidopsis iron nutrition

Authors: Van Dijck, L., Esposto, D., Huelsmann, C., Malisic, M., Piro, A., Giehl, R. F. H., Balcke, G. U., Tissier, A., Parker, J. E.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.04.657782

Model Organism: Arabidopsis thaliana

iron acquisition coumarins scopoletin Macrophomina phaseolina Arabidopsis thaliana

Unraveling the cis-regulatory code controlling abscisic acid-dependent gene expression in Arabidopsis using deep learning

Authors: Opdebeeck, H., Smet, D., Thierens, S., Minne, M., De Beukelaer, H., Zuallaert, J., Van Bel, M., Van Montagu, M., Degroeve, S., De Rybel, B., Vandepoele, K.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657584

Model Organism: Arabidopsis thaliana

Abscisic acid Arabidopsis thaliana deep learning promoter motifs ABF binding sites

Clade I TGA transcription factors are negative regulators of sulfate uptake and metabolism

Authors: Shukla, V., Basu, S., Koprivova, A., Ristova, D.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.06.658247

Model Organism: Arabidopsis thaliana

nitrate signaling sulfate uptake TGA transcription factors Arabidopsis thaliana pathogen interaction

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

GNC is a regulator of metabolic and productivity responses to elevated CO2 in Arabidopsis thaliana

Authors: Quebedeaux, J. C., Kannan, K., Marshall-Colon, A., Leakey, A. D.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.29.656866

Model Organism: Arabidopsis thaliana

GATA transcription factor elevated CO₂ Arabidopsis thaliana carbon and nitrogen metabolism transcriptomic response

Voltage-dependent anion channels are mitophagy receptors mediating the recycling of depolarized mitochondria in Arabidopsis

Authors: MA, W., MA, J., ZHANG, K., ZHENG, X., WANG, P., FENG, L., MING, S., ZHUANG, X., ZHOU, J., Gao, C., KANG, B. H.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.29.656919

Model Organism: Arabidopsis thaliana

mitophagy VDAC ATG8 Arabidopsis thaliana DNP uncoupler

Systematic measurements of dose-dependent responses for combinatorial treatments of SA and JA led to the development of transcriptomic biomarkers

Authors: Tomita, A., Maeda, T., Mori-Moriyama, N., Nomura, Y., Kurita, Y., Kashima, M., Betsuyaku, S., Nagano, A. J.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.29.656841

Model Organism: Arabidopsis thaliana

salicylic acid jasmonic acid hormone crosstalk transcriptomic biomarkers Arabidopsis thaliana

Galactan mobilization during carbon starvation compromises cell wall-mediated fungal resistance in Arabidopsis

Authors: Reckleben, L., Morton, R. N., Munzert-Eberlein, K. S., Thiel, S., Rautengarten, C., Tan, V., Harres, K. L., Zanoni, L., Ebert, B., Engelsdorf, T.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.28.656597

Model Organism: Arabidopsis thaliana

cell wall remodeling galactose salvage dark‑induced starvation Arabidopsis thaliana pathogen penetration resistance

A CRISPR/Cas9-induced restoration of bioluminescence reporter system for single-cell gene expression analysis in plants

Authors: Ueno, R., Ito, S., Oyama, T.

Date: 2025-05-30 · Version: 1

DOI: 10.1101/2025.05.27.656507

Model Organism: Arabidopsis thaliana

CRISPR/Cas9 bioluminescence reporter particle bombardment single‑cell gene expression Arabidopsis thaliana

COmapper: High-resolution mapping of meiotic crossovers by long-read sequencing in Arabidopsis

Authors: Byun, D., Son, N., Kim, H., Kim, J., Park, J., Park, S.-j., Kim, H., Kim, J., Kim, J., Lee, S., Hyun, Y., Ziolkowski, P. A., Henderson, I. R., Choi, K.

Date: 2025-05-30 · Version: 2

DOI: 10.1101/2024.10.21.619347

Model Organism: Arabidopsis thaliana

crossover mapping nanopore sequencing COmapper Arabidopsis thaliana recq4a recq4b mutant

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