Keywords: paralog processing, comparative transcriptomics, transcriptomics, auxin signaling

Latest 62 Papers

High radiosensitivity in the conifer Norway spruce (Picea abies) due to lesscomprehensive mobilisation of protection and repair responses compared to the radiotolerant Arabidopsis thaliana

Authors: Bhattacharjee, P., Blagojevic, D., Lee, Y., Gillard, G. B., Gronvold, L., Hvidsten, T. R., Sandve, S. R., Lind, O. C., Salbu, B., Brede, D. A., Olsen, J. E.

Date: 2025-04-14 · Version: 3

DOI: 10.1101/2023.11.20.562501

Model Organism: Multi-species

ionising radiation radiosensitivity comparative transcriptomics DNA damage repair antioxidant response

Welcome pathogens: transient heat dampens the responses to acibenzolar-S-methyl beyond defenses in apple plants

Authors: Chavonet, E., Nguyen, B.-h., Heintz, C., Cournol, R., Siroka, J., Novak, O., Larbat, R., Gaucher, M., Brisset, M.-N., Pantin, F., Degrave, A.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647103

Model Organism: Malus domestica

heat stress acibenzolar‑S‑methyl (ASM)induced immunity apple (Malus domestica)transcriptomics

Transcriptional plasticity of fast core chromosomes governs establishment of a fungal pathogen on evolutionarily distant plant lineages

Authors: Srivastava, V., Kaushik L S, S., Pullagurla, N. J., Zechmann, B., Di Pietro, A., Laha, D., Redkar, A.

Date: 2025-03-28 · Version: 1

DOI: 10.1101/2025.03.27.645276

Model Organism: Marchantia polymorpha

Fusarium oxysporum Marchantia polymorpha effector genes fast core chromosomes comparative transcriptomics

Omics-driven Identification of Candidate Genes and SNP markers in a Major QTL Controlling Early Heading in Rice

Authors: Rao, D., T, N. S., CG, G., Gaur, N., Jamaloddin, M., Maganti, S. M., Raman, M. S., Patel, H. K., Tiwari, S., Sonti, R. V.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.25.645207

Model Organism: Oryza sativa

heading date rice (Oryza sativa)QTL-seq SNP markers transcriptomics

Multilevel analysis of response to plant growth promoting and pathogenic bacteria in Arabidopsis roots and the role of CYP71A27 in this response

Authors: Koprivova, A., Ristova, D., Berka, M., Berkova, V., Türksoy, G. M., Andersen, T. G., Westhoff, P., Cerny, M., Kopriva, S.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.26.645393

Model Organism: Arabidopsis thaliana

CYP71A27 plant‑microbe interaction Pseudomonas fluorescens CH267 Burkholderia glumeae PG1 transcriptomics

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

The ribosomal protein RPS6A modulates auxin signalling and root development in Arabidopsis

Authors: Pan, K., Hou, K., Kong, M., Tan, S.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.26.640312

Model Organism: Arabidopsis thaliana

RPS6A auxin signaling Arabidopsis thaliana root development PIN transporters

Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana

Authors: Nowak, M. S., Harder, B., Meckoni, S. N., Friedhoff, R., Wolff, K., Pucker, B.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.06.15.599162

Model Organism: Victoria cruziana

Victoria cruziana flower color change anthocyanin biosynthesis comparative transcriptomics genome assembly

Transcriptomic insights into the role of miR394 in the regulation of flowering time in Arabidopsis thaliana

Authors: Belen, F., Bernardi, Y., Reutemann, A., Vegetti, A., Dotto, M. C.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.15.638417

Model Organism: Arabidopsis thaliana

miR394 flowering time Arabidopsis thaliana transcriptomics lncRNA

ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism

Authors: Rodriguez, L., Fiedler, L., Zou, M., Giannini, C., Monzer, A., Vladimirtsev, D., Randuch, M., Yu, Y., Gelova, Z., Verstraeten, I., Hajny, J., Chen, M., Tan, S., Hoermayer, L., Li, L., Marques-Bueno, M. M., Quddoos, Z., Molnar, G., Xu, T., Kulich, I., Jaillais, Y., Friml, J.

Date: 2025-02-20 · Version: 2

DOI: 10.1101/2022.11.30.518503

Model Organism: Arabidopsis thaliana

auxin signaling PIN2 phosphorylation TMK1 kinase root gravitropism ABP1 receptor

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