Keywords: paralog processing, deep learning, proteomics, metabolomics

Latest 48 Papers

The seed mitochondrial proteome of Lupinus albus provides insight into energy metabolism during germination

Authors: Angermann, C., Braun, H.-P., Hildebrandt, T. M.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.19.677279

Model Organism: Lupinus albus

seed mitochondria Lupinus albus proteomics oxidative phosphorylation germination

Botanic Spectrum Analyser: A Deep Learning GUI for Plant Image Segmentation in Hyperspectral and RGB Phenotyping

Authors: Walsh, J. J., Gorgu, L., Cavel, E., Poulain, V., Gutierrez, L., Mangina, E., Negrao, S.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.14.676080

Model Organism: Multi-species

plant phenotyping image segmentation U‑Net hyperspectral imaging deep learning

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

Authors: Dupuis, S., Chastain, J. L., Han, G., Zhong, V., Gallaher, S. D., Nicora, C. D., Purvine, S. O., Lipton, M. S., Niyogi, K. K., Iwai, M., Merchant, S. S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.28.672467

Model Organism: Chlamydomonas reinhardtii

photoprotection diurnal light acclimation thylakoid ultrastructure transcriptomics proteomics

Adaptive Strategies of the invasive aquatic plant, Ludwigia grandiflora subps. hexapetala: Contrasting Plasticity Between Aquatic and Terrestrial Morphotypes.

Authors: Genitoni, J., Vassaux, D., RENAULT, D., Maury, S., BARLOY, D. H.

Date: 2025-09-01 · Version: 1

DOI: 10.1101/2025.08.27.672630

Model Organism: Ludwigia grandiflora subsp. hexapetala

phenotypic plasticity Ludwigia grandiflora invasive species metabolomics phytohormones

Unveiling the molecular identity of plant autophagic compartments: A proteo-lipidomic study in Arabidopsis thaliana

Authors: Lupette, J., Chambaud, C., Buridan, M., Castets, J., Wattelet-Boyer, V., Toboso Moreno, I., Kosuth, T., Yatim, C., Dittrich-Domergue, F., Gros, V., Jouhet, J., Claverol, S., Herice, C., Melser, S., Genva, M., Fouillen, L., Bessoule, J.-J., Domergue, F., Bernard, A.

Date: 2025-08-28 · Version: 1

DOI: 10.1101/2025.08.25.671700

Model Organism: Arabidopsis thaliana

autophagy phagophore membrane proteomics lipidomics membrane remodeling

Stress-dependent responses of grapevine wood and fungal pathogen activity under esca and drought

Authors: Chambard, M., Cantu, D., Bortolami, G., Dell'Acqua, N., Ferrer, N., Gambetta, G., Garcia, J., Gastou, P., Massonnet, M., Moretti, S., Rochepeau, A., Petriacq, P., Foulongne-Oriol, M., Delmas, C. E. L.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.05.668645

Model Organism: Vitis vinifera

drought stress esca disease grapevine (Vitis vinifera)wood metatranscriptomics metabolomics

Drought and methyl jasmonate memory interact to determine plant functioning under current drought stress in a perennial grass

Authors: Bhatt, T., Rathore, N., Semerad, J., Cajthaml, T., Thakur, D., Munzbergova, Z.

Date: 2025-08-03 · Version: 1

DOI: 10.1101/2025.08.03.668340

Model Organism: Festuca rubra

drought memory methyl jasmonate Festuca rubra transgenerational priming metabolomics

Phenotypic scoring of Canola Blackleg severity using machine learning image analysis

Authors: Hu, Q., Anderson, S. N., Gardner, S., Ernst, T. W., Koscielny, C. B., Bahia, N. S., Johnson, C. G., Jarvis, A. C., Hynek, J., Coles, N., Falak, I., Charne, D. R., Ruidiaz, M. E., Linares, J. N., Mazis, A., Stanton, D. J.

Date: 2025-07-22 · Version: 1

DOI: 10.1101/2025.07.17.665372

Model Organism: Multi-species

blackleg disease canola (Brassica spp.)deep learning image-based phenotyping disease severity scoring

Novel production of structurally diverse and sticky defense metabolites on wild tomatillo fruits

Authors: Nowack, L., Deanna, R., Smith, S. D., Schenck, C. A.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.16.665232

Model Organism: Physalis

acylsugars Physalis metabolomics acyltransferase (ASAT1)fruit surface chemistry

Integrative Multi-Omics Analysis Reveals Stress-Specific Molecular Architectures in Soybean under Drought and Rust Infection

Authors: Husein, G., Castro-Moretti, F. R., Prado, M., Amorim, L., Mazzafera, P., Canales, J., Monteiro-Vitorello, C. B.

Date: 2025-07-08 · Version: 1

DOI: 10.1101/2025.07.07.663534

Model Organism: Glycine max

Asian soybean rust drought stress transcriptomics metabolomics co-expression network

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