Keywords: paralog processing, deep learning, spatial transcriptomics, plant immunity

Latest 37 Papers

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

An ERF transcription factor StPTI5, a novel regulator of endophyte community maintenance in potato

Authors: Lukan, T., Kraigher, B., Pogacar, K., Stare, K., Grubar Kovacic, T., Zagorscak, M., Petek, M., Stefanic, P., Vozelj, A., Levak, V., Mahkovec Povalej, T., Garcia, J. M., Pozo, M. J., Mandic-Mulec, I., Gruden, K.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.24.650297

Model Organism: Solanum tuberosum

PTI5 ethylene signaling plant immunity beneficial microbes Solanum tuberosum

Deciphering the Sequence Basis and Application of Transcriptional Initiation Regulation in Plant Genomes Through Deep Learning

Authors: Gao, P., Lian, L., Feng, W., Ma, Y., Lin, J., Qin, L., Hao, S., Zhao, H., Liu, X., Yuan, J., Lin, Z., Li, X., Guan, Y., Wang, X.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.22.649999

Model Organism: Glycine max

transcription start site promoter motifs deep learning soybean domestication plant gene regulation

A hydrophobic core in the coiled-coil domain is essential for NRC resistosome function

Authors: Wang, H.-Y., Yuen, E. L. H., Lee, K.-T., Goh, F.-J., Bozkurt, T. O., Wu, C.-H.

Date: 2025-04-08 · Version: 2

DOI: 10.1101/2025.01.21.634219

Model Organism: General

NLR coiled-coil domain hydrophobic core NRC4 plant immunity

The Global Wheat Full Semantic Organ Segmentation (GWFSS) dataset

Authors: Wang, Z., Zenkl, R., Greche, L., De Solan, B., Bernigaud Samatan, L., Ouahid, S., Visioni, A., Robles-Zazueta, C. A., Pinto, F., Perez-Olivera, I., Reynolds, M. P., Zhu, C., Liu, S., D'argaignon, M.-P., Lopez-Lozano, R., Weiss, M., Marzougui, A., Roth, L., Dandrifosse, S., Carlier, A., Dumont, B., Mercatoris, B., Fernandez, J., Chapman, S., Najafian, K., Stavness, I., Wang, H., Guo, W., Virlet, N., Hawkesford, M., Chen, Z., David, E., Gillet, J., Irfan, K., Comar, A., Hund, A.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.18.642594

Model Organism: Triticum aestivum

wheat semantic segmentation computer vision deep learning phenotyping

Fiber Bragg grating based sensing system for non-destructive root phenotyping using ResNet prediction

Authors: Binder, S., Hossain, K., Bucksch, A., Fok, M.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.09.17.613457

Model Organism: Zea mays

root architecture fiber Bragg grating real-time phenotyping deep learning Zea mays

Non-invasive imaging of salicylic and jasmonic acid activities in planta

Authors: Balakireva, A. V., Karataeva, T. A., Karampelias, M., Mitiouchkina, T. Y., Machacek, J., Shakhova, E. S., Perfilov, M. M., Belozerova, O. A., Palkina, K. A., Drazna, N., Vondrakova, Z., Fleiss, A., Fakhranurova, L. I., Markina, N. M., Morozov, V. V., Bugaeva, E. N., Delnova, G. M., Choob, V. V., Yampolsky, I. V., Petrasek, J., Mishin, A. S., Sarkisyan, K. S.

Date: 2025-02-17 · Version: 1

DOI: 10.1101/2025.02.17.636591

Model Organism: Multi-species

jasmonic acid salicylic acid autoluminescent reporter plant immunity Arabidopsis thaliana

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