Keywords: paralog processing, deep learning, transcriptomics, transcriptomic analysis, SWI3, Arabidopsis thaliana

Latest 289 Papers

Identification and Characterization of Interacting Proteins of TARANI/ Ubiquitin Specific Protease-14 in Arabidopsis thaliana

Authors: Hegde, A. S., Nath, U.

Date: 2025-02-03 · Version: 1

DOI: 10.1101/2025.02.01.636027

Model Organism: Arabidopsis thaliana

TNI/UBP14 ubiquitin protease protein-protein interactions Arabidopsis thaliana mass spectrometry

Low relative air humidity leads to smaller, denser stomata and higher stomatal ratios in Arabidopsis

Authors: Tulva, I., Jalakas, P., Ivandi, E., Wierzchula, A., Obinwanne, P. K., Horak, H.

Date: 2025-02-03 · Version: 1

DOI: 10.1101/2025.01.31.635895

Model Organism: Arabidopsis thaliana

stomatal density adaxial vs. abaxial stomata air humidity Arabidopsis thaliana amphistomaty

Genome-scale transcriptome augmentation during Arabidopsis thaliana photomorphogenesis

Authors: Schivre, G., Wolff, L., Mirasole, F. M., Armanet, E., Davidson, M. L.. H., Vidal, A., Cumenal, D., Dumont, M., Bourge, M., Baroux, C., Bourbousse, C., Barneche, F.

Date: 2025-01-31 · Version: 1

DOI: 10.1101/2025.01.30.635720

Model Organism: Arabidopsis thaliana

photomorphogenesis spike-in RNA‑seq Arabidopsis thaliana HY5 transcription factor global transcriptome up‑regulation

The Arabidopsis TNL immune receptor BNT1 localizes to the plastid envelope and mediates flg22-induced resistance against Pseudomonas

Authors: Margutti, M. Y. P., Cislaghi, A. P., Herrera-Vasquez, A., Palomeque, J. R., Bellino, F., Alvarez, M. E., Blanco-Herrera, F., Cecchini, N. M.

Date: 2025-01-31 · Version: 1

DOI: 10.1101/2025.01.29.635455

Model Organism: Arabidopsis thaliana

NLR plastid localization PTI Arabidopsis thaliana isoform-specific signaling

Regulation of brassinosteroid signaling through Arabidopsis transcription factor TCP8 by a conserved post-translational mechanism

Authors: Spears, B. J., Mozal, R., Magnabosco, S. A., Beauford, N. M., Baker, N. C., Voeglie, Q., Gassmann, W.

Date: 2025-01-31 · Version: 1

DOI: 10.1101/2025.01.30.635591

Model Organism: Arabidopsis thaliana

SUMOylation TCP transcription factors post‑translational modification Arabidopsis thaliana phytohormone stress response

Phylogenetic diversity of light dependent phosphorylation of Thr78 in Rca

Authors: Bhatnagar, N., Chung, S. S., Hodge, J., Boyd, R., Kim, S. Y., Sands, M., Leakey, A., Ort, D. R., Burgess, S. J.

Date: 2025-01-28 · Version: 3

DOI: 10.1101/2024.08.27.609719

Model Organism: Arabidopsis thaliana

Rubisco activase threonine 78 phosphorylation Arabidopsis thaliana C3 vs C4 plants post‑translational regulation

Metabolic network divergence: polyamine and ethylene dynamics in Arabidopsis thaliana and Solanum lycopersicum

Authors: Cermanova, K., Bublava, P., Darbandsari, M., Fellner, M., Novak, O., Karady, M.

Date: 2025-01-27 · Version: 1

DOI: 10.1101/2025.01.24.634693

Model Organism: Multi-species

polyamines ethylene precursors metabolomics Arabidopsis thaliana Solanum lycopersicum

Isolation of a novel plant growth-promoting Dyella sp. from a Danish natural soil

Authors: Dethier, L., Jespersen, J. R. P., Lloyd, J., Pupi, E., Zhou, W., Liu, F., Bai, Y., Halkier, B. A., Xu, D.

Date: 2025-01-26 · Version: 1

DOI: 10.1101/2025.01.24.634660

Model Organism: Arabidopsis thaliana

Dyella sp. A4 plant growth-promoting bacteria Arabidopsis thaliana root architecture biostimulant

The receptor-like kinases BIR1 and BIR3 modulates antiviral resistance by different mechanisms

Authors: Robinson, C., Guzman-Benito, I., Sede, A. R., Elvira-Gonzalez, L., Hua, C., Ciska, M., Nurnberger, T., Heinlein, M., Llave, C.

Date: 2025-01-26 · Version: 1

DOI: 10.1101/2025.01.24.634664

Model Organism: Arabidopsis thaliana

BIR receptor-like kinases antiviral resistance Arabidopsis thaliana tobacco rattle virus plasmodesmata callose deposition

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