Keywords: paralog processing, introgression, DDM1, elevated CO2

Latest 12 Papers

Elevated CO2 drives epigenetic reprogramming andchromatin dynamics in Arabidopsis thaliana

Authors: Lewis, S., Li, M., Panda, K., Harkess, A., Slotkin, R. K., Meyers, B. C.

Date: 2025-11-21 · Version: 1

DOI: 10.1101/2025.11.20.689512

Model Organism: Arabidopsis thaliana

elevated CO2 epigenetic memory 3D genome architecture Arabidopsis thaliana chromatin loops

Evaluating effects of elevated and accelerated NPQ relaxation on yield, physiology and transcription in soybean

Authors: Singh, D., de Souza, A. P., Doran, L., Hansen, J., Burgess, S. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689310

Model Organism: Glycine max

photosynthetic efficiency elevated CO2 transgenic soybean VPZ construct transcriptomics

Biological nitrification inhibition (BNI) in wheat for climate adaptation in acidic and alkaline soils

Authors: Bozal-Leorri, A., Gonzalez-Murua, C., Zarraonaindia, I., Marino, D., Arrese-Igor, C., Gonzalez-Moro, M. B.

Date: 2025-11-07 · Version: 1

DOI: 10.1101/2025.11.06.686715

Model Organism: Triticum aestivum

biological nitrification inhibition nitrous oxide emissions elevated CO2 soil pH wheat (Triticum aestivum)

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Enhancement of Arabidopsis growth by Enterobacter sp. SA187 under elevated CO2 is dependent on ethylene signalling activation and primary metabolism reprogramming

Authors: Ilyas, A., Mauve, C., Pateyron, S., Paysant-Le Roux, C., Bigeard, J., Hodges, M., de Zelicourt, A.

Date: 2025-07-09 · Version: 1

DOI: 10.1101/2025.07.08.663752

Model Organism: Arabidopsis thaliana

Enterobacter sp. SA187 elevated CO2 Arabidopsis thaliana phytohormone signaling transcriptomics

Multi-year study on the effects of elevated CO2 in mature oaks unravels subtle metabolic adjustments but stable biotic stress resistance

Authors: Sanchez-Lucas, R., Raw, M., Datta, A., Hawkins, K., Brettle, D., Platt, E. A., Ullah, S., Hart, K., Mayoral, C., Stegner, M., Kranner, I., Hayward, S. A., Pastor, V., MacKenzie, A. R., Luna, E.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.03.652050

Model Organism: Quercus robur

elevated CO2 Quercus robur metabolomic profiling biotic stress FACE

Micro-Mel and Mini-Mel short life cycle dwarf lines with Solanum anguivi introgressions as the first model varieties for eggplant research and breeding

Authors: Martinez-Lopez, M., Baraja-Fonseca, V., Garcia-Fortea, E., Plazas, M., Vilanova, S., Prohens, J., Gramazio, P.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.07.642017

Model Organism: Solanum melongena

Solanum melongena dwarf model lines introgression whole‑genome sequencing rapid‑cycling

Population-scale gene expression analysis reveals the contribution of expression diversity to the modern wheat improvement

Authors: Zhang, Z., Ma, S., Yin, M., Zhao, C., Zhao, X., yu, Y., Wang, H., Li, X., Si, Y., Niu, J., Xie, J., Wang, L., Wu, J., Zhang, Y., Zheng, Q., Zheng, S., Jiang, N., Liu, X., Ling, H.-Q., He, F.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.18.638840

Model Organism: Triticum aestivum

gene expression variation pan‑genome eQTL analysis introgression wheat

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