Keywords: paralog processing, lateral root development, comparative transcriptomics, circadian clock

Latest 26 Papers

A non-coding SNP in ELF3 alters expression of ELF3β and confers adaptation of Arabidopsis to a continental climate

Authors: Buckley, C. R., Fournier-Level, A., Haydon, M. J.

Date: 2025-10-24 · Version: 1

DOI: 10.1101/2025.10.23.684042

Model Organism: Arabidopsis thaliana

circadian clock EARLY FLOWERING 3 (ELF3)Arabidopsis natural variation genome-wide association study climate adaptation

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Utilization of Arabidopsis E3 ubiquitin decoys high-throughput yeast screen platform to dissect the ubiquitin-mediated circadian clock regulation

Authors: Tu, Y.-T., Chen, C.-A., Gendron, J., Lee, C.-M.

Date: 2025-09-01 · Version: 1

DOI: 10.1101/2025.08.31.673341

Model Organism: Arabidopsis thaliana

protein ubiquitination E3 ubiquitin ligases yeast two-hybrid circadian clock Arabidopsis thaliana

Spatiotemporal Dynamics of Anionic Phospholipids Orchestrate Lateral Root Initiation and Morphogenesis in Arabidopsis thaliana

Authors: Dubrovsky, J. G., Li, J., Bouziri, S., Bormann, E., Geiger, C., Reyes-Hernandez, J., Maizel, A.

Date: 2025-08-09 · Version: 1

DOI: 10.1101/2025.08.08.669267

Model Organism: Arabidopsis thaliana

lateral root development phosphoinositide signaling PI(4,5)P2 phosphatidylserine membrane lipid dynamics

TOC1 supresses PAMP-triggered immunity in Arabidopsis

Authors: Fraser, O. J. P., Spoel, S. H., van Ooijen, G.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.16.665052

Model Organism: Arabidopsis thaliana

circadian clock PAMP-triggered immunity flg22 TOC1 overexpression Arabidopsis thaliana

Rational modulation of plant root development using engineered cytokinin regulators

Authors: Rattan, R., Alamos, S., Szarzanowicz, M., Markel, K., Shih, P. M.

Date: 2025-06-22 · Version: 2

DOI: 10.1101/2024.12.06.627221

Model Organism: Arabidopsis thaliana

synthetic biology Type‑B response regulators cytokinin signaling tissue‑specific promoters lateral root development

A Circadian Light Regulator Controls a Core CAM Gene in the Ice Plant's C3-to-CAM Transition

Authors: Perron, N., Le, T., Dervinis, C., Pereira, W. J., Barbazuk, W. B., Kirst, M.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.03.652029

Model Organism: Mesembryanthemum crystallinum

Crassulacean acid metabolism single-nucleus RNA sequencing PPCK1 HY5 transcription factor circadian clock

SlHSFB3a developmentally regulates lateral root formation by modulating auxin signaling in tomato.

Authors: Majee, A., Sairem, B., Kumar, V., Sane, A. P., Sane, V. A.

Date: 2025-04-18 · Version: 1

DOI: 10.1101/2025.04.15.648910

Model Organism: Solanum lycopersicum

HSF transcription factor SlHSFB3a auxin homeostasis lateral root development tomato

2-Oxoglutarate-dependent dioxygenases contribute to cardenolide biosynthesis in Erysimum cheiranthoides (wormseed wallflower)

Authors: Younkin, G., Holland, C. K., Jander, G.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.10.648230

Model Organism: Erysimum cheiranthoides

cardenolide biosynthesis 2‑oxoglutarate‑dependent dioxygenases hydroxylation comparative transcriptomics enzyme modeling

Comparative transcriptomics uncovers plant and fungal genetic determinants of mycorrhizal compatibility

Authors: Marques-Galvez, J. E., de Freitas Pereira, M., Nehls, U., Ruytinx, J., Barry, K., Peter, M., Martin, F., Grigoriev, I. V., Veneault-Fourrey, C., Kohler, A.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.11.648352

Model Organism: Populus

ectomycorrhizal symbiosis poplar comparative transcriptomics gene regulons compatibility

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