Keywords: paralog processing, machine learning, jasmonic acid

Latest 18 Papers

Endophytes induce systemic spatial reprogramming of metabolism in poplar roots under drought

Authors: Aufrecht, J. A., Velickovic, D., Tournay, R., Couvillion, S. P., Balasubramanian, V. K., Winkler, T., Herrera, D., Stanley, R., Doty, S., Ahkami, A. H.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.02.657501

Model Organism: General

beneficial endophytes drought stress root metabolome chemical imaging machine learning

Systematic measurements of dose-dependent responses for combinatorial treatments of SA and JA led to the development of transcriptomic biomarkers

Authors: Tomita, A., Maeda, T., Mori-Moriyama, N., Nomura, Y., Kurita, Y., Kashima, M., Betsuyaku, S., Nagano, A. J.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.29.656841

Model Organism: Arabidopsis thaliana

salicylic acid jasmonic acid hormone crosstalk transcriptomic biomarkers Arabidopsis thaliana

Multiplexed profiling of transcriptional regulators in plant cells

Authors: Alamos, S., Waldburger, L., Dee, A., Owens, L., Rattan, R., Ong, S., Shih, P.

Date: 2025-05-14 · Version: 1

DOI: 10.1101/2025.05.12.653590

Model Organism: General

transcriptional regulation high-throughput plant assay protein‑coding library machine learning synthetic protein engineering

Phylogenetic Analysis and Machine Learning Identify Signatures of Selection and Predict Deleterious Mutations in Common Bean

Authors: Cordoba-Novoa, H. A., Buckler, E. S., Romay, C., Berthel, A., Johnson, L., Balasubramanian, P., Hoyos Villegas, V.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.05.652309

Model Organism: Phaseolus vulgaris

deleterious mutations genetic load common bean MAGIC population machine learning

S2-PepAnalyst: A Web Tool for Predicting Plant Small Signalling Peptides

Authors: Vomo Donfack, K. L., Abaach, M., Luna, A. M., Ginot, G., Doblas, V. G., Morilla, I.

Date: 2025-05-06 · Version: 2

DOI: 10.1101/2024.08.02.606319

Model Organism: General

small signalling peptides machine learning protein language models geometric-topological analysis reinforcement learning

High Density Phenotypic Map of Natural Variation for Intermediate Phenotypes Associated with Stalk Lodging Resistance in Maize

Authors: Kunduru, B., Bokros, N. T., Tabaracci, K., Kumar, R., Brar, M. S., Stubbs, C. J., Oduntan, Y., DeKold, J., Bishop, R. H., Woomer, J., Verges, V. L., McDonald, A., McMahan, C. S., DeBolt, S., Robertson, D. J., Sekhon, R.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647088

Model Organism: Zea mays

stalk lodging resistance maize phenomics genetic architecture intermediate phenotypes machine learning

Sunflower yield modeling with XAI: Historical weather impacts and forecasting

Authors: Majumder, S., Mason, C.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.27.640573

Model Organism: Helianthus annuus

explainable AI sunflower yield climate variability machine learning Shared Socioeconomic Pathways

Non-invasive imaging of salicylic and jasmonic acid activities in planta

Authors: Balakireva, A. V., Karataeva, T. A., Karampelias, M., Mitiouchkina, T. Y., Machacek, J., Shakhova, E. S., Perfilov, M. M., Belozerova, O. A., Palkina, K. A., Drazna, N., Vondrakova, Z., Fleiss, A., Fakhranurova, L. I., Markina, N. M., Morozov, V. V., Bugaeva, E. N., Delnova, G. M., Choob, V. V., Yampolsky, I. V., Petrasek, J., Mishin, A. S., Sarkisyan, K. S.

Date: 2025-02-17 · Version: 1

DOI: 10.1101/2025.02.17.636591

Model Organism: Multi-species

jasmonic acid salicylic acid autoluminescent reporter plant immunity Arabidopsis thaliana

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