Keywords: paralog processing, machine learning, metabarcoding, Marchantia polymorpha

Latest 36 Papers

Phylogenetic Analysis and Machine Learning Identify Signatures of Selection and Predict Deleterious Mutations in Common Bean

Authors: Cordoba-Novoa, H. A., Buckler, E. S., Romay, C., Berthel, A., Johnson, L., Balasubramanian, P., Hoyos Villegas, V.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.05.652309

Model Organism: Phaseolus vulgaris

deleterious mutations genetic load common bean MAGIC population machine learning

S2-PepAnalyst: A Web Tool for Predicting Plant Small Signalling Peptides

Authors: Vomo Donfack, K. L., Abaach, M., Luna, A. M., Ginot, G., Doblas, V. G., Morilla, I.

Date: 2025-05-06 · Version: 2

DOI: 10.1101/2024.08.02.606319

Model Organism: General

small signalling peptides machine learning protein language models geometric-topological analysis reinforcement learning

Modulation of the GT Family 47 clade B gene affects arabinan deposition in elaters of Marchantia polymorpha

Authors: Kang, H. S. F., Lampugnani, E. R., Tong, X., Prabhakar, P. K., Flores-Sandoval, E., Hansen, J., Jorgensen, B., Bowman, J. L., Urbanowicz, B. R., Ebert, B., Persson, S.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.05.02.651808

Model Organism: Marchantia polymorpha

GT47B arabinosyltransferase 1,5‑linked arabinan Marchantia polymorpha cell wall composition CoMPP

The Building Blocks of Early Land Plants: Glycosyltransferases and Cell Wall Architecture in the model liverwort Marchantia polymorpha

Authors: Kang, H. S. F., Tong, X., Mariette, A., Leong, M., Beahan, C., Flores-Sandoval, E., Pedersen, G., Rautengarten, C., Bowman, J. L., Ebert, B., Bacic, A., Doblin, M., Persson, S., Lampugnani, E. R.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.30.651426

Model Organism: Marchantia polymorpha

Marchantia polymorpha cell wall polysaccharides arabinan glycosyltransferase families comparative genomics

The MpCAFA gene encodes a ciliary protein required for spermatozoid motility in the liverwort Marchantia polymorpha

Authors: MORITA, M., Yamato, K. T.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650577

Model Organism: Marchantia polymorpha

MpCAFA ciliary motility spermatozoid Marchantia polymorpha CAPS/FAP115 domains

The cytochrome P450 enzyme MpCYP78E1 inhibits meristem initiation and activity in Marchantia polymorpha

Authors: Spencer, V., Casey, C., Mosiolek, M., Jandrasits, K., Edelbacher, N., Dolan, L.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.28.651025

Model Organism: Marchantia polymorpha

Marchantia polymorpha meristem activity MpCYP78E1 RNA‑seq branching regulation

Replicated repurposing of an ancestral transcriptional complex in land plants

Authors: Kongsted, T. E., Romani, F., Airoldi, C. A., Haseloff, J., Glover, B. J.

Date: 2025-04-28 · Version: 1

DOI: 10.1101/2025.04.25.650595

Model Organism: Marchantia polymorpha

MBW transcriptional complex MYB transcription factor Marchantia polymorpha flavonoid pathway evolution oil body maturation

A tRNA-gRNA multiplexing system for CRISPR genome editing in Marchantia polymorpha.

Authors: Frangedakis, E., Yelina, N., Eeda, S. K., Romani, F., Fragkidis, A., Haseloff, J., Hibberd, J.

Date: 2025-04-20 · Version: 1

DOI: 10.1101/2025.04.18.649274

Model Organism: Marchantia polymorpha

CRISPR/Cas9 multiplex gRNA expression tRNA-mediated processing Marchantia polymorpha thallus transformation

Arsenic-sensing domain controls ACR3 transporter trafficking and function in Marchantia polymorpha

Authors: Mizio, K., Bonter, I., Zbieralski, K., Dolzblasz, A., Tomaszewska, P., Staszewski, J., Wawrzycka, D., Reymer, A., Bialek, W., Kriechbaumer, V., Haseloff, J., Wysocki, R., Maciaszczyk-Dziubinska, E.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.13.648538

Model Organism: Marchantia polymorpha

Arsenic detoxification ACR3 transporter Marchantia polymorpha metalloid‑proton antiporter arsenic‑sensing domain

High Density Phenotypic Map of Natural Variation for Intermediate Phenotypes Associated with Stalk Lodging Resistance in Maize

Authors: Kunduru, B., Bokros, N. T., Tabaracci, K., Kumar, R., Brar, M. S., Stubbs, C. J., Oduntan, Y., DeKold, J., Bishop, R. H., Woomer, J., Verges, V. L., McDonald, A., McMahan, C. S., DeBolt, S., Robertson, D. J., Sekhon, R.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647088

Model Organism: Zea mays

stalk lodging resistance maize phenomics genetic architecture intermediate phenotypes machine learning

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