Keywords: paralog processing, machine learning, multi-omics, Zea mays

Latest 42 Papers

Aphid-derived cross-kingdom RNA dynamics underpin maize resistance

Authors: Jiang, S., Zhang, Z., Liu, C., Zhu, Y., Kou, Y., Yang, P., Hu, Z., Wu, J., Wang, Y., Wan, F., Wu, G., Chen, Y.

Date: 2025-09-28 · Version: 1

DOI: 10.1101/2025.09.25.678037

Model Organism: Zea mays

aphid long non‑coding RNA cross‑kingdom effectors Zea mays RNA interference

Spatial inheritance patterns across maize ears are associated with alleles that reduce pollen fitness

Authors: Ruggiero, D., Bang, M., Leary, M., Flieg, H., Garcia-Lamas, L., Vejlupkova, Z., Megraw, M., Jiang, D., Leiboff, S., Fowler, J. E.

Date: 2025-09-20 · Version: 1

DOI: 10.1101/2025.09.17.676879

Model Organism: Zea mays

pollen fitness spatial inheritance Ds‑GFP mutants computer vision phenotyping Zea mays

Partial retention of ancient function increases genetic pleiotropy in grass evolution

Authors: de Neve, A. E., Kelly, O. A., Kelly, T., Leiboff, S., Bartlett, M. E.

Date: 2025-08-23 · Version: 1

DOI: 10.1101/2025.08.22.670905

Model Organism: Zea mays

genetic pleiotropy axillary meristem suppression floral organ suppression high-throughput quantitative phenotyping Zea mays

Predicting flowering time using integrated morphophysiological and genomic data with machine learning models

Authors: Babaei, M., Nemati, H., Arouiee, H., Torkamaneh, D.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669697

Model Organism: Cannabis sativa

flowering time Cannabis sativa genotyping-by-sequencing machine learning SNP markers

Non-catalytic and catalytic TREHALOSE-6-PHOSPHATE SYNTHASES interact with RAMOSA3 to control maize development.

Authors: Tran, T., Claeys, H., Abraham Juarez, M. J., Vi, L. S., Xu, X., Michalski, K., Chou, T. H., Iohannes, S. D., Boumpas, P., Williams, Z., Sheppard, S., Griffiths, C., Paul, M., Furukawa, H., Jackson, D.

Date: 2025-08-12 · Version: 1

DOI: 10.1101/2025.08.09.669499

Model Organism: Zea mays

Trehalose-6-phosphate non‑catalytic TPS Zea mays protein complex developmental regulation

Pioneer bark beetle attacks induce multifaceted localized defense responses in Norway spruce

Authors: Ramires, M. J., Netherer, S., Schebeck, M., Hummel, K., Schlosser, S., Razzazi-Fazeli, E., Ertl, R., Ahmad, M., Espinosa-Ruiz, A., Carrera, E., Arc, E., Martinez-Godoy, M. A., Banos, J., Caballero, T., Ledermann, T., van Loo, M., Trujillo-Moya, C.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668443

Model Organism: Picea abies

Norway spruce bark beetle defense multi-omics jasmonic acid phenolic compounds

ZmCRY1s interact with GL2 in a blue light dependent manner to regulate epidermal wax composition in Zea mays

Authors: Zhao, Z., Feng, F., Liu, Y., Liu, Y., Wang, F., Ni, Y., Liang, H., Hu, W., Wang, S., Hao, Y., Li, X., Li, J., Wang, J., Zhang, P., Liu, H.

Date: 2025-08-06 · Version: 1

DOI: 10.1101/2025.08.06.668858

Model Organism: Zea mays

cryptochrome Zea mays blue light signaling UV-B tolerance epidermal wax biosynthesis

Virus-induced upregulation of mitochondrial metabolism modulates cytosolic redox balance and defense responses

Authors: Hou, L.-Y., Wu, C.-H., Lin, N.-S.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.05.663277

Model Organism: Nicotiana benthamiana

metabolic reprogramming Bamboo mosaic virus mitochondrial metabolism redox balance multi-omics

Integrating Load-Cell Lysimetry and Machine Learning for Prediction of Daily Plant Transpiration

Authors: Friedman, S., Averbuch, N., Nevo, T., Moshelion, M.

Date: 2025-06-30 · Version: 2

DOI: 10.1101/2024.11.24.625038

Model Organism: Multi-species

daily transpiration machine learning gravimetric load cells Random Forest XGBoost

Rapid replacement of established by exotic genetic lineages of the fungal maize pathogen <it>Exserohilum turcicum</it> in the Swiss Rhine valley

Authors: Vidal Villarejo, M., Hammerschmidt, M., Oppliger, B., Oppliger, H., Schmid, K. J.

Date: 2025-06-24 · Version: 1

DOI: 10.1101/2025.06.24.661258

Model Organism: Zea mays

Exserohilum turcicum metagenomic pool sequencing clonal lineages phyllobiome Zea mays

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