Keywords: paralog processing, machine learning, pattern‑triggered immunity

Latest 20 Papers

New alleles of Arabidopsis BIK1 reinforce its predominant role in pattern-triggered immunity and caution interpretations of other reported functions

Authors: Song, B., Choi, S., Kong, L., Kim, S.-I., Fliegmann, J., Li, X., DeFalco, T. A., Hu, M., Li, M., Zhao, Y., Wang, H., Shan, L., Nuernberger, T., He, P., zipfel, c., Zhou, J.-M.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.02.657414

Model Organism: Arabidopsis thaliana

BIK1 PBL1 pattern‑triggered immunity CRISPR‑Cas9 gene editing T‑DNA insertion mutants

MIK2 clade receptor function in perception of a Fusarium-derived elicitor is conserved among different plant families

Authors: Maroschek, J., Roesgen, Y., Roessner, C., Snoeck, S., Schwechheimer, C., Zipfel, C., Hueckelhoven, R.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.22.655486

Model Organism: Arabidopsis thaliana

pattern‑triggered immunity MIK2 receptor kinase Fusarium elicitor SCOOP peptides evolutionary conservation

STT3A is required for recognition of pathogen-derived sphingolipids in Arabidopsis

Authors: Choi, S., Shimizu, M., Abe, A., Ishihama, N., Ishikawa, Y., Takemoto, D., Shirasu, K., Takano, Y., Terauchi, R., Kato, H.

Date: 2025-05-19 · Version: 1

DOI: 10.1101/2025.05.18.654772

Model Organism: Arabidopsis thaliana

pattern‑triggered immunity ceramide D (Pi‑Cer D)STT3A oligosaccharyltransferase NCER2 ceramidase Lumi‑Map screening

Multiplexed profiling of transcriptional regulators in plant cells

Authors: Alamos, S., Waldburger, L., Dee, A., Owens, L., Rattan, R., Ong, S., Shih, P.

Date: 2025-05-14 · Version: 1

DOI: 10.1101/2025.05.12.653590

Model Organism: General

transcriptional regulation high-throughput plant assay protein‑coding library machine learning synthetic protein engineering

Phylogenetic Analysis and Machine Learning Identify Signatures of Selection and Predict Deleterious Mutations in Common Bean

Authors: Cordoba-Novoa, H. A., Buckler, E. S., Romay, C., Berthel, A., Johnson, L., Balasubramanian, P., Hoyos Villegas, V.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.05.652309

Model Organism: Phaseolus vulgaris

deleterious mutations genetic load common bean MAGIC population machine learning

S2-PepAnalyst: A Web Tool for Predicting Plant Small Signalling Peptides

Authors: Vomo Donfack, K. L., Abaach, M., Luna, A. M., Ginot, G., Doblas, V. G., Morilla, I.

Date: 2025-05-06 · Version: 2

DOI: 10.1101/2024.08.02.606319

Model Organism: General

small signalling peptides machine learning protein language models geometric-topological analysis reinforcement learning

High Density Phenotypic Map of Natural Variation for Intermediate Phenotypes Associated with Stalk Lodging Resistance in Maize

Authors: Kunduru, B., Bokros, N. T., Tabaracci, K., Kumar, R., Brar, M. S., Stubbs, C. J., Oduntan, Y., DeKold, J., Bishop, R. H., Woomer, J., Verges, V. L., McDonald, A., McMahan, C. S., DeBolt, S., Robertson, D. J., Sekhon, R.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647088

Model Organism: Zea mays

stalk lodging resistance maize phenomics genetic architecture intermediate phenotypes machine learning

Designer antisense circRNAGFP reduces GFP protein abundance in Arabidopsis protoplasts in a sequence-specific manner, independent of RNAi pathways

Authors: Hossain, M., Pfafenroth, C., Nasfi, S., Sede, A. R., Imani, J., Secic, E., Galli, M., Schaefer, P., Bindereif, A., Heinlein, M., Ladera, M., Kogel, K.-H.

Date: 2025-03-12 · Version: 2

DOI: 10.1101/2023.11.20.567890

Model Organism: Arabidopsis thaliana

circular RNA Arabidopsis thaliana targeted gene regulation RNAi‑independent pattern‑triggered immunity

Sunflower yield modeling with XAI: Historical weather impacts and forecasting

Authors: Majumder, S., Mason, C.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.27.640573

Model Organism: Helianthus annuus

explainable AI sunflower yield climate variability machine learning Shared Socioeconomic Pathways

The Proteomics Landscape of Pattern Triggered Immunity in the Arabidopsis Leaf Apoplast

Authors: Chen, H.-C., Newton, C. J., Zheng, Y., Kong, F., Yao, Y., Yang, L., Kvitko, B. H.

Date: 2025-02-08 · Version: 1

DOI: 10.1101/2025.02.06.636724

Model Organism: Arabidopsis thaliana

apoplast pattern‑triggered immunity flg22 proteomics exosomes

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