Keywords: paralog processing, microgravity, ascorbate, metabarcoding, transcriptomics, multi-omics

Latest 42 Papers

Transcriptional responses of Solanum lycopersicum to three distinct parasites reveal host hubs and networks underlying parasitic successes

Authors: Truch, J., Jaouannet, M., Da Rocha, M., Kulhanek-Fontanille, E., Van Ghelder, C., Rancurel, C., Migliore, O., Pere, A., Jaubert, S., Coustau, C., Galiana, E., Favery, B.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.22.701158

Model Organism: Solanum lycopersicum

tomato pathogen compatibility transcriptomics co‑expression network Arabidopsis interactome

Root phenolics as potential drivers of preformed defenses and reduced disease susceptibility in a paradigm bread wheat mixture

Authors: Mathieu, L., Chloup, A., Marty, S., Savajols, J., Paysant-Le Roux, C., Launay-Avon, A., Martin, M.-L., Totozafy, J.-C., Perreau, F., Rochepeau, A., Rouveyrol, C., Petriacq, P., Morel, J.-B., Meteignier, L.-V., Ballini, E.

Date: 2026-01-14 · Version: 1

DOI: 10.64898/2026.01.13.699261

Model Organism: Triticum aestivum

root-mediated interactions bread wheat Septoria tritici blotch transcriptomics metabolomics

A novel pathosystem between Aeschynomene evenia and Aphanomyces euteiches reveals new immune components in quantitative legume root-rot resistance.

Authors: Baker, M., Martinez, Y., Keller, J., Sarrette, B., Pervent, M., Libourel, C., Le Ru, A., Bonhomme, M., Gough, C., Castel, B., ARRIGHI, J.-F., Jacquet, C.

Date: 2026-01-11 · Version: 1

DOI: 10.64898/2026.01.11.698850

Model Organism: Aeschynomene evenia

legume immunity Aphanomyces euteiches quantitative resistance transcriptomics Nod factor-independent symbiosis

A chloroplast-localized protein AT4G33780 regulates Arabidopsis development and stress-associated responses

Authors: Yang, Z.

Date: 2026-01-03 · Version: 1

DOI: 10.64898/2026.01.03.697459

Model Organism: Arabidopsis thaliana

AT4G33780 chloroplast regulator Arabidopsis thaliana transcriptomics metabolomics

METABOLIC AND TRANSCRIPTOMIC ANALYSES IDENTIFY COORDINATED RESOURCE REALLOCATION IN RESPONSE TO PHOSPHATE SUPPLY IN HEMP

Authors: Wee Y, B., Berkowitz, O., Ng, S., Pegg, A., Whelan, J., Jost, R.

Date: 2025-12-23 · Version: 2

DOI: 10.1101/2025.09.18.677093

Model Organism: Cannabis sativa

Cannabis sativa phosphate nutrition transcriptomics source‑sink regulation nutrient signaling

A photoprotection dial maps holistic light-stress response in diatoms

Authors: Croteau, D., Jaubert, M., Quemar, T., Falciatore, A., Maes, A., Bailleul, B.

Date: 2025-12-15 · Version: 1

DOI: 10.64898/2025.12.11.693581

Model Organism: Phaeodactylum tricornutum

non-photochemical quenching Phaeodactylum tricornutum high-light stress transcriptomics photosynthetic regulation

Molecular response of the diatom Coscinodiscus granii and its co-occurring dictyochophyte during Lagenisma coscinodisci parasite infection

Authors: Orvain, C., Bertrand, L., Moussy, A., Porcel, B. M., Vallet, M., Carradec, Q., Thurotte, A.

Date: 2025-12-12 · Version: 2

DOI: 10.1101/2025.10.10.681168

Model Organism: Coscinodiscus granii

diatom‑parasite interactions oomycete effectors Coscinodiscus granii transcriptomics metabolomics

Evaluating effects of elevated and accelerated NPQ relaxation on yield, physiology and transcription in soybean

Authors: Singh, D., de Souza, A. P., Doran, L., Hansen, J., Burgess, S. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689310

Model Organism: Glycine max

photosynthetic efficiency elevated CO2 transgenic soybean VPZ construct transcriptomics

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

Unravelling the intraspecific variation in drought responses in seedlings of European black pine (Pinus nigra J.F. Arnold)

Authors: Ahmad, M., Hammerbacher, A., Priemer, C., Ciceu, A., Karolak, M., Mader, S., Olsson, S., Schinnerl, J., Seitner, S., Schoendorfer, S., Helfenbein, P., Jakub, J., Breuer, M., Espinosa, A., Caballero, T., Ganthaler, A., Mayr, S., Grosskinsky, D. K., Wienkoop, S., Schueler, S., Trujillo-Moya, C., van Loo, M.

Date: 2025-10-21 · Version: 1

DOI: 10.1101/2025.10.20.683360

Model Organism: Pinus nigra

drought tolerance Pinus nigra metabolomics transcriptomics phenotyping

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