Keywords: paralog processing, multi-omics, phytohormone modulation

Latest 8 Papers

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

THE ROOT-KNOT NEMATODE EFFECTOR MJ-MSP18: A SWISS ARMY KNIFE FOR REPROGRAMMING PLANT IMMUNITY

Authors: Chen, Y., Maulana, M. I., Oklestkova, J., Siroka, J., Jonckheere, V., De Gernier, H., Bauters, L., Zhang, N., Strnad, M., Van Damme, P., Goossens, A., Gheysen, G., Stojilkovic, B.

Date: 2025-08-29 · Version: 1

DOI: 10.1101/2025.08.28.672664

Model Organism: Solanum lycopersicum

Mj-MSP18 effector BSK7/FLS2 interaction TurboID proximity labeling RNA‑seq transcriptional reprogramming phytohormone modulation

Pioneer bark beetle attacks induce multifaceted localized defense responses in Norway spruce

Authors: Ramires, M. J., Netherer, S., Schebeck, M., Hummel, K., Schlosser, S., Razzazi-Fazeli, E., Ertl, R., Ahmad, M., Espinosa-Ruiz, A., Carrera, E., Arc, E., Martinez-Godoy, M. A., Banos, J., Caballero, T., Ledermann, T., van Loo, M., Trujillo-Moya, C.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668443

Model Organism: Picea abies

Norway spruce bark beetle defense multi-omics jasmonic acid phenolic compounds

Virus-induced upregulation of mitochondrial metabolism modulates cytosolic redox balance and defense responses

Authors: Hou, L.-Y., Wu, C.-H., Lin, N.-S.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.05.663277

Model Organism: Nicotiana benthamiana

metabolic reprogramming Bamboo mosaic virus mitochondrial metabolism redox balance multi-omics

Multi-Omics Analysis of Heat Stress-Induced Memory in Arabidopsis

Authors: Thirumlaikumar, V. P. P., Yu, L., Arora, D., Mubeen, U., Wisniewski, A., Walther, D., Giavalisco, P., Alseekh, S., DL Nelson, A., Skirycz, A., Balazadeh, S.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.19.660594

Model Organism: Arabidopsis thaliana

heat stress acquired thermotolerance heat stress memory multi-omics Arabidopsis thaliana

Alginate Oligosaccharides (from DP2 to DP9) Differentially Modulate Phytohormone Levels in Botrytis cinerea-Infected Wheat

Authors: Zhang, Z., Wang, X., Chi, Y.

Date: 2025-06-20 · Version: 1

DOI: 10.1101/2025.06.18.660292

Model Organism: Triticum aestivum

alginate oligosaccharides degree of polymerization phytohormone modulation wheat Botrytis cinerea

The multiomics landscape of small peptides encoded by long non-coding RNA-derived sORFs in rice

Authors: Chen, Z., Lin, H., Wei, L., Wang, S., Peng, T., Song, W., Wang, D., Wu, Y., Wu, L., Wu, J., Wang, Y.

Date: 2025-04-02 · Version: 1

DOI: 10.1101/2025.04.01.646714

Model Organism: Oryza sativa

long non-coding RNAs small open reading frame peptides multi-omics ribosome profiling LC-MS/MS proteomics