Keywords: paralog processing, root development, barley, multi-omics

Latest 20 Papers

Pioneer bark beetle attacks induce multifaceted localized defense responses in Norway spruce

Authors: Ramires, M. J., Netherer, S., Schebeck, M., Hummel, K., Schlosser, S., Razzazi-Fazeli, E., Ertl, R., Ahmad, M., Espinosa-Ruiz, A., Carrera, E., Arc, E., Martinez-Godoy, M. A., Banos, J., Caballero, T., Ledermann, T., van Loo, M., Trujillo-Moya, C.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668443

Model Organism: Picea abies

Norway spruce bark beetle defense multi-omics jasmonic acid phenolic compounds

New molecular players: siRNA expression and gene regulation in Hordeum vulgare ageing seeds after germination

Authors: Puchta-Jasinska, M., Bolc, P., Motor, A., Boczkowska, M.

Date: 2025-08-01 · Version: 1

DOI: 10.1101/2025.07.28.667253

Model Organism: Hordeum vulgare

small interfering RNAs seed viability barley RNA‑directed DNA methylation trans‑acting siRNAs

Post-Domestication selection of MKK3 Shaped Seed Dormancy and End-Use Traits in Barley

Authors: Jorgensen, M. E., Vequaud, D., Wang, Y., Andersen, C. B., Bayer, M., Box, A., Braune, K., Cai, Y., Chen, F., Antonio Cuesta-Seijo, J., Dong, H., Fincher, G. B., Gojkovic, Z., Huang, Z., Jaegle, B., Kale, S. M., Krsticevic, F., Roux, P.-M. L., Lozier, A., Lu, Q., Mascher, M., Murozuka, E., Nakamura, S., Simmelsgaard, M. U., Pedas, P. R., Pin, P., Sato, K., Spannagl, M., Rasmussen, M. W., Russell, J., Schreiber, M., Thomsen, H. C., Tulloch, S., Thomsen, N. W., Voss, C., Skadhauge, B., Stein, N., Waugh, R., Willerslev, E., Dockter, C.

Date: 2025-07-16 · Version: 1

DOI: 10.1101/2025.07.11.664137

Model Organism: Hordeum vulgare

grain dormancy pre-harvest sprouting MKK3 MAPK pathway barley

Virus-induced upregulation of mitochondrial metabolism modulates cytosolic redox balance and defense responses

Authors: Hou, L.-Y., Wu, C.-H., Lin, N.-S.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.05.663277

Model Organism: Nicotiana benthamiana

metabolic reprogramming Bamboo mosaic virus mitochondrial metabolism redox balance multi-omics

Multi-Omics Analysis of Heat Stress-Induced Memory in Arabidopsis

Authors: Thirumlaikumar, V. P. P., Yu, L., Arora, D., Mubeen, U., Wisniewski, A., Walther, D., Giavalisco, P., Alseekh, S., DL Nelson, A., Skirycz, A., Balazadeh, S.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.19.660594

Model Organism: Arabidopsis thaliana

heat stress acquired thermotolerance heat stress memory multi-omics Arabidopsis thaliana

Ethylene Receptor Gain- and Loss-of-function Mutants Reveal an ETR1-dependent Transcriptional Network in Roots

Authors: White, M. G., Harkey, A., Muhlemann, J. K., Olex, A. L., Pfeffer, N. J., Houben, M., Binder, B., Muday, G. K.

Date: 2025-06-22 · Version: 3

DOI: 10.1101/2024.06.26.600793

Model Organism: Arabidopsis thaliana

ethylene signaling ETR1 root development gene regulatory network Arabidopsis

The multiomics landscape of small peptides encoded by long non-coding RNA-derived sORFs in rice

Authors: Chen, Z., Lin, H., Wei, L., Wang, S., Peng, T., Song, W., Wang, D., Wu, Y., Wu, L., Wu, J., Wang, Y.

Date: 2025-04-02 · Version: 1

DOI: 10.1101/2025.04.01.646714

Model Organism: Oryza sativa

long non-coding RNAs small open reading frame peptides multi-omics ribosome profiling LC-MS/MS proteomics

Chemical Inhibition of Splicing-Related Protein Kinases Reveals Phosphorylation-Driven Regulation of RNA Alternative Splicing in Arabidopsis Seedlings

Authors: Rodriguez Gallo, M. C., Murray, C., Kennedy, C., Talasila, M., Bhatt, D., Steyer, J., Glover, M., Uhrig, R. G.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.24.644839

Model Organism: Arabidopsis thaliana

SR protein kinases alternative splicing root development chemical inhibition phosphoproteomics

MYB93 regulates responses to environmental sulphur in Arabidopsis and tomato.

Authors: Cao, X., Wilkinson, H. B., Hutton, B., McMulkin, N., Graham, N. S., Etherington, R., Oliver, A. G., Clayton, C. M., Kaur, H., Coates, J. C.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.04.641362

Model Organism: Arabidopsis thaliana

sulfur nutrition AtMYB93 root development transcriptome analysis elemental analysis

The ribosomal protein RPS6A modulates auxin signalling and root development in Arabidopsis

Authors: Pan, K., Hou, K., Kong, M., Tan, S.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.26.640312

Model Organism: Arabidopsis thaliana

RPS6A auxin signaling Arabidopsis thaliana root development PIN transporters

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