Keywords: paralog processing, root development, spatial transcriptomics, Arabidopsis thaliana

Latest 256 Papers

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

The Arabidopsis WAVE/SCAR Protein BRICK1 Associates with Cell Edges and Plasmodesmata

Authors: Ambrose, C., Chi, Z.

Date: 2025-05-08 · Version: 1

DOI: 10.1101/2025.05.06.652582

Model Organism: Arabidopsis thaliana

plasmodesmata BRK1 WAVE/SCAR complex ARP2/3-mediated actin nucleation Arabidopsis thaliana

Liquid-phase determination of Arabidopsis respiration and photosynthesis using Clark-type O2 electrodes

Authors: Sena, F., Couture, C., Berais-Rubio, A., Millar, A. H., Signorelli, S.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.04.652138

Model Organism: Arabidopsis thaliana

Photosynthesis Respiration Clark-type oxygen electrode Arabidopsis thaliana Abiotic stress

SNRK3.15 is a crucial component of the sulfur deprivation response in Arabidopsis thaliana

Authors: Apodiakou, A., Heyneke, E., Alseekh, S., Pinsorn, P., Metzger, S., Kopriva, S., Schulze, W., Hoefgen, R., Whitcomb, S. J.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.04.29.651231

Model Organism: Arabidopsis thaliana

sulfate deprivation CIPK14/SNRK3.15 Arabidopsis thaliana kinase signaling proteomics

Acclimation of carbon metabolism to a changing environment across a leaf rosette of Arabidopsis thaliana

Authors: Brodsky, V., Kerscher, A., Urban, M., Naegele, T.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.04.29.651223

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana leaf-specific acclimation photosynthesis carbon metabolism carbon balance modeling

Actin Depolymerization Factors (ADFs) Moonlighting: Nuclear Immune Regulation by Interacting with WRKY Transcription Factors and Shaping the Transcriptome

Authors: Li, P., Kelley, B., Li, Z., Procter, B., Corrion, A., Xie, X., Sheick, R., Lu, Y.-j., Nomoto, M., Wei, C.-i., Tada, Y., He, S.-Y., Xiao, S., Day, B.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.29.651294

Model Organism: Arabidopsis thaliana

actin depolymerization factors nuclear transcription regulation WRKY transcription factors plant immunity Arabidopsis thaliana

A role of villin-dependent F-actin organization in peroxisome motility in Arabidopsis cells

Authors: Huang, C., Koenig, A., Lee, Y.-R. J., Shi, Y., Hu, J., Liu, B.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.23.650090

Model Organism: Arabidopsis thaliana

Villin proteins F-actin organization Peroxisome motility Arabidopsis thaliana Mutant analysis

A citrullination-ubiquitination pathway controls pre-meiotic H1 eviction and is essential for gametogenesis in Arabidopsis

Authors: Li, Y., Fei, D., Schubert, J., Rutowicz, K., Kaczmarska, Z., Linares, A., Giraldo-Fonseca, A., Bischof, S., Grossniklaus, U., Baroux, C.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.18.649492

Model Organism: Arabidopsis thaliana

linker histone H1.1 citrullination ubiquitination spore mother cell Arabidopsis thaliana

The autophagy-related genes AtATG5 and AtATG7 influence reserve mobilisation and responses to ABA during seed germination in Arabidopsis thaliana

Authors: Contreras, E., Sanchez-Vicente, I., Pastor-Mora, E., Aylon-Rodriguez, M., Gonzalez-Ceballos, M., Delgado-Gutierrez, M. A., Lorenzo, O., Vicente-Carbajosa, J., Iglesias-Fernandez, R.

Date: 2025-04-21 · Version: 2

DOI: 10.1101/2024.05.15.593177

Model Organism: Arabidopsis thaliana

autophagy Arabidopsis thaliana ABA signaling ATG5/ATG7 ABI5

Large-scale single-cell profiling of stem cells uncovers redundant regulators of shoot development and yield trait variation

Authors: Xu, X., Passalacqua, M., Rice, B., Demesa-Arevalo, E., Kojima, M., Takebayashi, Y., Harris, B., Sakakibara, H., Gallavotti, A., Gillis, J., Jackson, D.

Date: 2025-04-17 · Version: 2

DOI: 10.1101/2024.03.04.583414

Model Organism: Multi-species

single-cell RNA sequencing shoot stem cells Arabidopsis thaliana Zea mays stem cell regulators

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