Keywords: paralog processing, root development, transcriptome, ascorbate, multi-omics, auxin signaling

Latest 32 Papers

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Ca2+ signature-dependent control of auxin sensitivity in Arabidopsis

Authors: Song, H., Baudon, A., Freund, M., Randuch, M., Pencik, A., Ondrej, N., He, Z., Kaufmann, K., Gilliham, M., Friml, J., Hedrich, R., Huang, S.

Date: 2025-10-05 · Version: 1

DOI: 10.1101/2025.10.04.680446

Model Organism: Arabidopsis thaliana

auxin signaling calcium signaling optogenetics Arabidopsis root cell division inhibition

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

The improved auxin signalling via entire mutation enhances aluminium tolerance in tomato

Authors: Silva, R., Siqueira, J. A., Batista-Silva, W., Ferreira-Silva, M., Thiago, W., Vargas, J. R., Vilela, G., Robson, R., Neto, D. F. M., Azevedo, A. A., Ribeiro, C., Fernie, A., Nunes-Nesi, A., Araujo, W.

Date: 2025-09-01 · Version: 1

DOI: 10.1101/2025.08.29.673006

Model Organism: Tomato

aluminium toxicity auxin signaling tomato mutants reactive oxygen species metabolite profiling

Pioneer bark beetle attacks induce multifaceted localized defense responses in Norway spruce

Authors: Ramires, M. J., Netherer, S., Schebeck, M., Hummel, K., Schlosser, S., Razzazi-Fazeli, E., Ertl, R., Ahmad, M., Espinosa-Ruiz, A., Carrera, E., Arc, E., Martinez-Godoy, M. A., Banos, J., Caballero, T., Ledermann, T., van Loo, M., Trujillo-Moya, C.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668443

Model Organism: Picea abies

Norway spruce bark beetle defense multi-omics jasmonic acid phenolic compounds

Virus-induced upregulation of mitochondrial metabolism modulates cytosolic redox balance and defense responses

Authors: Hou, L.-Y., Wu, C.-H., Lin, N.-S.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.05.663277

Model Organism: Nicotiana benthamiana

metabolic reprogramming Bamboo mosaic virus mitochondrial metabolism redox balance multi-omics

ERAD machinery controls the conditional turnover of PIN-LIKES in plants

Authors: Noura, S., Ferreira Da Silva Santos, J., Feraru, E., Hoernstein, S. N. W., Feraru, M. I., Montero-Morales, L., Roessling, A.-K., Scheuring, D., Strasser, R., Huesgen, P. F., Waidmann, S., Kleine-Vehn, J.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.05.663279

Model Organism: Arabidopsis thaliana

auxin signaling PIN-LIKES (PILS)ER-associated degradation (ERAD)proteasome-dependent degradation protein turnover

Pathogenic fungus exploits the lateral root regulators to induce pluripotency in maize shoots

Authors: Khan, M., Nagarajan, N., Schneewolf, K., Marcon, C., Wang, D., Hochholdinger, F., Yu, P., Djamei, A.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.30.662278

Model Organism: Zea mays

Ustilago maydis effectors TOPLESS corepressor auxin signaling lateral root initiation LBD transcription factors

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

Multi-Omics Analysis of Heat Stress-Induced Memory in Arabidopsis

Authors: Thirumlaikumar, V. P. P., Yu, L., Arora, D., Mubeen, U., Wisniewski, A., Walther, D., Giavalisco, P., Alseekh, S., DL Nelson, A., Skirycz, A., Balazadeh, S.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.19.660594

Model Organism: Arabidopsis thaliana

heat stress acquired thermotolerance heat stress memory multi-omics Arabidopsis thaliana

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