Keywords: paralog processing, spatial transcriptomics, GWAS, gene regulatory network

Latest 35 Papers

Wild genes to the rescue: High-throughput genomics uncovers the wild source of broomrape resistance in sunflower

Authors: Sisou, D., Ziadne, H., Eizenberg-Weiss, M., Eizenberg, H., Hubner, S.

Date: 2025-09-16 · Version: 1

DOI: 10.1101/2025.09.14.676089

Orobanche cumana Helianthus annuus GWAS k‑mer mapping resistance QTL

Conserved transcriptional reprogramming in nematode infected root cells

Authors: Saura-Sanchez, M., Gomez Rojas, A., Deveux, M., Minne, M., Grones, C., Eekhout, T., Abril-Urias, P., Van Bel, M., Tenorio Berrio, R., Vandepoele, K., Escobar, C., Beeckman, T., De Rybel, B., Kyndt, T.

Date: 2025-09-05 · Version: 1

DOI: 10.1101/2025.09.05.674408

Model Organism: Arabidopsis thaliana; Oryza sativa

plant‑parasitic nematodes single‑cell transcriptomics gene regulatory network conserved regulator AtATHB2/OsHOX28 nematode resistance

Comparative gene regulatory network mapping of Brassicaceae members with differential drought tolerance

Authors: Pandiarajan, R., Lin, C.-W., Sauer, M., Rothballer, S. T., Marin-de la Rosa, N., Schwehn, P., Papadopoulou, E., Mairhormann, B., Falter-Braun, P.

Date: 2025-08-25 · Version: 1

DOI: 10.1101/2025.08.24.668636

Model Organism: Multi-species

drought tolerance gene regulatory network Brassicaceae transcription factor interactions ABA signaling

An Axiom SNP genotyping array for potato: development, evaluation and applications

Authors: Baig, N., Thelen, K., Ayenan, M. A. T., Hartje, S., Obeng-Hinneh, E., Zgadzaj, R., Renner, J., Muders, K., Truberg, B., Rosen, A., Prigge, V., Bruckmueller, J., Luebeck, J., Van Inghelandt, D., Stich, B.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670748

Model Organism: Solanum tuberosum

high-density SNP array potato (Solanum tuberosum)genomic-assisted breeding GWAS polyphenol oxidase activity

Identification of a novel link connecting indole-3-acetamide with abscisic acid biosynthesis and signaling

Authors: Moya-Cuevas, J., Ortiz-Garcia, P., Gonzalez Ortega-Villizan, A., Viguera-Leza, I., Perez-Gonzalez, A., Paz-Ares, J., Alonso-Blanco, C., Vicente-Carbajosa, J., Pollmann, S.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.15.670611

Model Organism: Arabidopsis thaliana

indole-3-acetamide (IAM)abscisic acid (ABA) signaling Arabidopsis thaliana GWAS hormone crosstalk

Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear

Authors: Qu, Y., Tan, C., Yang, L., Pasquariello, M., Alabdullah, A. K., Sun, S., Iqbal, M., Salamon, J., Boden, S.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.12.670006

Model Organism: Triticum aestivum

spikelet development spatial transcriptomics wheat inflorescence RAMOSA2 ALOG1

Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut

Authors: Sagar, U. N., Parmar, S., Gangurde, S. S., Sharma, V., Pandey, A. K., Mohinuddin, D. K., Dube, N., Bhat, R. S., John, K., Sreevalli, M. D., Rani, P. S., Singh, K., Varshney, R. K., Pandey, M. K.

Date: 2025-08-05 · Version: 1

DOI: 10.1101/2025.08.04.668427

Model Organism: Arachis hypogaea

groundnut nutritional quality GWAS SNP markers KASP

HHO5: A key orchestrator of dose-dependent nitrogen signaling pathways in Arabidopsis

Authors: Hinckley, W. E., Swift, J., Romei, F., Muschietti, J., Huang, S. S. C., Coruzzi, G. M., Obertello, M.

Date: 2025-08-02 · Version: 1

DOI: 10.1101/2025.07.31.667803

Model Organism: General

HHO5 transcription factor nitrogen-dose signaling phloem-specific expression dual activator/repressor gene regulatory network

Plant-Compatible Xenium In Situ Sequencing: Optimised Protocol for Spatial Transcriptomics in Medicago truncatula Roots and Nodules

Authors: Jhu, M.-Y., Heffer, J., Deamer, A., Moraes, T. A., Piskorz, A. M., Xia, C.

Date: 2025-07-25 · Version: 1

DOI: 10.1101/2025.07.22.663073

Model Organism: Medicago truncatula

spatial transcriptomics Xenium in situ sequencing Medicago truncatula root nodules autofluorescence mitigation

Integrative genomic and transcriptomic analyses uncover regulatory landscape of symbiotic nitrogen fixation in soybean natural population

Authors: Li, Y., Feng, w., Feng, X., Liu, X., Hao, S., Lian, L., Gao, L., Shao, Y., Chen, H., Chen, Z., Yuan, J., Qin, L., Li, X., Li, X., Wang, X.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.18.665310

Model Organism: Glycine max

symbiotic nitrogen fixation GWAS TWAS eQTL mapping ATAC-seq

PreviousPage 2 of 4Next