Keywords: paralog processing, spatial transcriptomics, GWAS, root system architecture

Latest 34 Papers

Wild genes to the rescue: High-throughput genomics uncovers the wild source of broomrape resistance in sunflower

Authors: Sisou, D., Ziadne, H., Eizenberg-Weiss, M., Eizenberg, H., Hubner, S.

Date: 2025-09-16 · Version: 1

DOI: 10.1101/2025.09.14.676089

Orobanche cumana Helianthus annuus GWAS k‑mer mapping resistance QTL

Exodermis lignification impacts lateral root emergence in Brachypodium distachyon

Authors: Bellande, K., Vieira Teixeira, C. D. J., D'orlando, A., Perez, L., Sibout, R., Roulin, A. C., Vermeer, J. E. M., Badet, T.

Date: 2025-09-04 · Version: 1

DOI: 10.1101/2025.09.02.673693

Model Organism: Brachypodium distachyon

lateral root emergence exodermis lignification root system architecture stress response

An Axiom SNP genotyping array for potato: development, evaluation and applications

Authors: Baig, N., Thelen, K., Ayenan, M. A. T., Hartje, S., Obeng-Hinneh, E., Zgadzaj, R., Renner, J., Muders, K., Truberg, B., Rosen, A., Prigge, V., Bruckmueller, J., Luebeck, J., Van Inghelandt, D., Stich, B.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670748

Model Organism: Solanum tuberosum

high-density SNP array potato (Solanum tuberosum)genomic-assisted breeding GWAS polyphenol oxidase activity

Identification of a novel link connecting indole-3-acetamide with abscisic acid biosynthesis and signaling

Authors: Moya-Cuevas, J., Ortiz-Garcia, P., Gonzalez Ortega-Villizan, A., Viguera-Leza, I., Perez-Gonzalez, A., Paz-Ares, J., Alonso-Blanco, C., Vicente-Carbajosa, J., Pollmann, S.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.15.670611

Model Organism: Arabidopsis thaliana

indole-3-acetamide (IAM)abscisic acid (ABA) signaling Arabidopsis thaliana GWAS hormone crosstalk

Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear

Authors: Qu, Y., Tan, C., Yang, L., Pasquariello, M., Alabdullah, A. K., Sun, S., Iqbal, M., Salamon, J., Boden, S.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.12.670006

Model Organism: Triticum aestivum

spikelet development spatial transcriptomics wheat inflorescence RAMOSA2 ALOG1

Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut

Authors: Sagar, U. N., Parmar, S., Gangurde, S. S., Sharma, V., Pandey, A. K., Mohinuddin, D. K., Dube, N., Bhat, R. S., John, K., Sreevalli, M. D., Rani, P. S., Singh, K., Varshney, R. K., Pandey, M. K.

Date: 2025-08-05 · Version: 1

DOI: 10.1101/2025.08.04.668427

Model Organism: Arachis hypogaea

groundnut nutritional quality GWAS SNP markers KASP

Growth Cost and Transport Efficiency Tradeoffs Define Root System Optimization Across Varying Developmental Stages and Environments in Arabidopsis

Authors: Faizi, K., Mehta, P., Maida, A., Humphreys, T., Berrigan, E., McKee-Reid, L., McCorkell, R., Tagade, A., Rumbelow, J., Showalter, J., Brent, L., Coroenne, C., Rigaud, A., Chandrasekhar, A., Navlakha, S., Martin, A., Pradal, C., Lee, S., Busch, W., Platre, M. P.

Date: 2025-07-26 · Version: 1

DOI: 10.1101/2025.07.25.666579

Model Organism: Arabidopsis thaliana

root system architecture Pareto optimality cost‑efficiency tradeoff manganese regulation hy5/chl1-5 genotype

Plant-Compatible Xenium In Situ Sequencing: Optimised Protocol for Spatial Transcriptomics in Medicago truncatula Roots and Nodules

Authors: Jhu, M.-Y., Heffer, J., Deamer, A., Moraes, T. A., Piskorz, A. M., Xia, C.

Date: 2025-07-25 · Version: 1

DOI: 10.1101/2025.07.22.663073

Model Organism: Medicago truncatula

spatial transcriptomics Xenium in situ sequencing Medicago truncatula root nodules autofluorescence mitigation

Integrative genomic and transcriptomic analyses uncover regulatory landscape of symbiotic nitrogen fixation in soybean natural population

Authors: Li, Y., Feng, w., Feng, X., Liu, X., Hao, S., Lian, L., Gao, L., Shao, Y., Chen, H., Chen, Z., Yuan, J., Qin, L., Li, X., Li, X., Wang, X.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.18.665310

Model Organism: Glycine max

symbiotic nitrogen fixation GWAS TWAS eQTL mapping ATAC-seq

Exploring phenotypic and genetic variation in Lactuca with GWAS in L. sativa and L. serriola

Authors: Mehrem, S. L., Van den Ackerveken, G., Snoek, B. L.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.27.661939

Model Organism: Multi-species

Lactuca wild relatives anthocyanin accumulation leaf morphology pathogen resistance GWAS

PreviousPage 2 of 4Next