Keywords: paralog processing, spatial transcriptomics, Triticum aestivum

Latest 20 Papers

Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear

Authors: Qu, Y., Tan, C., Yang, L., Pasquariello, M., Alabdullah, A. K., Sun, S., Iqbal, M., Salamon, J., Boden, S.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.12.670006

Model Organism: Triticum aestivum

spikelet development spatial transcriptomics wheat inflorescence RAMOSA2 ALOG1

Plant-Compatible Xenium In Situ Sequencing: Optimised Protocol for Spatial Transcriptomics in Medicago truncatula Roots and Nodules

Authors: Jhu, M.-Y., Heffer, J., Deamer, A., Moraes, T. A., Piskorz, A. M., Xia, C.

Date: 2025-07-25 · Version: 1

DOI: 10.1101/2025.07.22.663073

Model Organism: Medicago truncatula

spatial transcriptomics Xenium in situ sequencing Medicago truncatula root nodules autofluorescence mitigation

Mycotoxin-driven proteome remodeling reveals limited activation of Triticum aestivum responses to emerging chemotypes integrated with fungal modulation of ergosterols

Authors: Ramezanpour, S., Alijanimamaghani, N., McAlister, J. A., Hooker, D., Geddes-McAlister, J.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.30.662327

Model Organism: Triticum aestivum

Fusarium head blight 15ADON/3ANX chemotype proteomics Triticum aestivum Fusarium graminearum

Spatial transcriptomics of developing wheat seed reveals radial expression patterns in endosperm and subgenome biased expression of key genes

Authors: Millsteed, T., Kainer, D., Sullivan, R., Sun, X., Li, K. L., Mao, L., Macdonald, A., Henry, R. J.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658529

Model Organism: Triticum aestivum

spatial transcriptomics wheat seed development endosperm gene expression subgenome bias STOmics platform

Spatial and single-cell transcriptomics capture two distinct cell states in plant immunity

Authors: Hu, Y., Schaefer, R., Rendleman, M., Slattery, A., Cramer, A., Nahiyan, A., Breitweiser, L., Shah, M., Kaehler, E., Yao, C., Bowling, A., Crow, J., May, G., Tabor, G., Thatcher, S., Uppalapati, S. R., Muppirala, U., Deschamps, S.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657683

Model Organism: Glycine max

spatial transcriptomics single-nuclei RNA-seq plant immunity Phakopsora pachyrhizi cell non‑autonomous defense

Scaling law links plant growth variation to grain yield in wheat stands

Authors: Golan, G., Vasseur, F., Huang, Y., Tan, K., Sadras, V., violle, c., Schnurbusch, T.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.19.654792

Model Organism: Triticum aestivum

growth allometry Triticum aestivum Photoperiod response-1 (Ppd-1)genotype-by-environment interaction grain yield

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Streptomyces coelicolor-plant association facilitates ergothioneine (EGT) uptake in Triticum aestivum

Authors: Pipinos, A., Kan, J., Smith, A., Zinati, G., Bais, H.

Date: 2025-04-08 · Version: 1

DOI: 10.1101/2025.04.08.647769

Model Organism: Triticum aestivum

ergothioneine Streptomyces coelicolor Triticum aestivum endophytic colonization bio‑stimulant

Real-Time Quantitative PCR Method for Assessing Wheat Cultivars for Resistance to Zymoseptoria tritici

Authors: Adhikari, T. B., Balaji, B., Goodwin, S. B.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.02.646880

Model Organism: Triticum aestivum

Zymoseptoria tritici Triticum aestivum real-time qPCR fungal DNA quantification Stb4/Stb8 resistance

TaWUS2D regulates the number of grains per spikelet by enhancing the number of fertile ovaries in Multi-Ovary Wheat

Authors: Schoen, A. W., Sharma, P. K., Mahlandt, A., Chen, A., Sheng, H., Kochian, L., Gao, P., Xiang, D., Quilichini, T., Venglat, P., Wang, S., Yadav, I. S., Gu, Y., Rodriguez-Leal, D., Luo, W., Qi, Y., Meier, N., Kajla, A., Willman, M., Brown-Guedira, G., Youngblood, C., Hulse-Kemp, A., Murphy, A., Gill, B., Uauy, C., Datla, R., Rawat, N., Tiwari, V.

Date: 2025-02-08 · Version: 1

DOI: 10.1101/2025.02.05.636547

Model Organism: Triticum aestivum

Triticum aestivum multi-ovary phenotype TaWUS2D map-based cloning HiFi long‑read genome assembly

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