Keywords: paralog processing, spatial transcriptomics, ascorbate, Arabidopsis thaliana

Latest 252 Papers

A CRISPR/Cas9-induced restoration of bioluminescence reporter system for single-cell gene expression analysis in plants

Authors: Ueno, R., Ito, S., Oyama, T.

Date: 2025-05-30 · Version: 1

DOI: 10.1101/2025.05.27.656507

CRISPR/Cas9 bioluminescence reporter particle bombardment single‑cell gene expression Arabidopsis thaliana

COmapper: High-resolution mapping of meiotic crossovers by long-read sequencing in Arabidopsis

Authors: Byun, D., Son, N., Kim, H., Kim, J., Park, J., Park, S.-j., Kim, H., Kim, J., Kim, J., Lee, S., Hyun, Y., Ziolkowski, P. A., Henderson, I. R., Choi, K.

Date: 2025-05-30 · Version: 2

DOI: 10.1101/2024.10.21.619347

Model Organism: Arabidopsis thaliana

crossover mapping nanopore sequencing COmapper Arabidopsis thaliana recq4a recq4b mutant

Mutation of a conserved stromal C-terminus threonine residue of Photosystem II subunit S slows down NPQ induction and speeds up relaxation.

Authors: Chin, W. Y., Walter, J., Robijns, A., Kromdijk, J.

Date: 2025-05-28 · Version: 1

DOI: 10.1101/2025.05.23.655821

Model Organism: Arabidopsis thaliana

non-photochemical quenching PsbS protein threonine-259 phosphorylation Arabidopsis thaliana photosystem II

Thermal proteome profiling identifies mitochondrial aminotransferases involved in cysteine catabolism via persulfides in plants

Authors: Heinemann, B., Moormann, J., Bady, S., Angermann, C., Schrader, A., Hildebrandt, T. M.

Date: 2025-05-28 · Version: 1

DOI: 10.1101/2025.05.23.655777

Model Organism: Arabidopsis thaliana

cysteine metabolism mitochondrial aminotransferases thermal proteome profiling Arabidopsis thaliana cysteine catabolism

EBSn, a robust synthetic reporter for monitoring ethylene responses in plants

Authors: Fernandez-Moreno, J.-P., Fenech, M., Yaschenko, A. E., Zhao, C., Neubauer, M., Davis, H. N., Marchi, A. J., Concannon, R., Keren-Keiserman, A., Reuveni, M., Levitsky, V. G., Oshchepkov, D., Dolgikh, V., Goldshmidt, A., Ascencio-Ibanez, J. T., Zemlyanskaya, E., Alonso, J. M., Stepanova, A. N.

Date: 2025-05-28 · Version: 1

DOI: 10.1101/2025.05.23.655144

Model Organism: Arabidopsis thaliana

ethylene signaling EIN3 transcription factor synthetic promoter GUS reporter assay Arabidopsis thaliana

Evaporative cooling signals for wound healing in plants

Authors: Balem, J. M., Tan, C., Dias, N. C. F., Arnold, M. L., Tran, S., Severns, P. M., Teixeira, P. J. P. L., Li, C., Yang, L.

Date: 2025-05-28 · Version: 1

DOI: 10.1101/2025.05.23.655667

Model Organism: Arabidopsis thaliana

wound healing Arabidopsis thaliana cold-responsive genes CBF transcription factors computer vision

Beyond binding motif: genomic context predicts transcription factor dependent regulation in Arabidopsis

Authors: Turchi, L., Lucas, J., Tichtinsky, G., Thierry-Mieg, N., Blanc-Mathieu, R., Parcy, F., Frenoy, A.

Date: 2025-05-27 · Version: 1

DOI: 10.1101/2025.05.23.655699

Model Organism: Arabidopsis thaliana

LEAFY transcription factor Arabidopsis thaliana transcription factor binding sites machine learning prediction regulatory genomics

Optimization of Bio-Orthogonal Non-Canonical Amino acid Tagging (BONCAT) for effective low-disruption labelling of Arabidopsis proteins in vivo

Authors: Hassan, N., Braun, S., Talasila, M., Fahlman, R., Uhrig, R. G.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.22.655591

Model Organism: Arabidopsis thaliana

BONCAT non‑canonical amino acids Arabidopsis thaliana protein synthesis labeling mass spectrometry

The JAW-TCP-FUL genetic axis triggers an early reorientation of cell anisotropy to initiate and drive fertilization-dependent fruit elongation in Arabidopsis

Authors: Sharma, A. N., G, K., V, A., S. S., N. S., Perumadaraya, A. J., Khadeeja, M., Pradeep, D., Basavaraju, S., Chandra, K., Rangarajan, A. N., Nath, U.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.20.655035

Model Organism: Arabidopsis thaliana

JAW‑TCP transcription factors FRUITFULL (FUL)parthenocarpy fruit elongation Arabidopsis thaliana

m6A RNA methylation attenuates thermotolerance in Arabidopsis

Authors: Shekhawat, K., Sheikh, A., Nawaz, K., Fatima, A., Alzayed, W., Nagaranjan, A. P., Hirt, H.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.22.655480

Model Organism: Arabidopsis thaliana

heat stress m6A RNA methylation thermotolerance Arabidopsis thaliana H3K4me3 histone modification

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