Keywords: paralog processing, spatial transcriptomics, ascorbate, Arabidopsis thaliana

Latest 252 Papers

Ethylene receptors are functionally conserved in calcium permeability across the green lineage

Authors: Yu, D., Ju, C., Feng, C., Wang, Y., Sun, Y., Gao, L., Liu, Z., Li, C., Wang, Y., He, X., Su, H., Hu, M., Meng, J., Tian, S., Liu, L., Hou, C., Kong, D., Li, L.

Date: 2025-10-20 · Version: 1

DOI: 10.1101/2025.10.20.683334

Model Organism: Arabidopsis thaliana

ethylene signaling Ca2+ permeability ETR1 receptor Arabidopsis thaliana conserved plant signaling

Impact of alternative splicing on Arabidopsis proteome

Authors: Reyes, A. V., Zhang, C., Karunadasa, S. S., Shrestha, R., Grismer, T. S., Byun, D., Xu, S.

Date: 2025-10-20 · Version: 3

DOI: 10.1101/2024.02.29.582853

Model Organism: Arabidopsis thaliana

alternative splicing isoform-specific peptides intron retention proteogenomics Arabidopsis thaliana

Maternal Light and Temperature Modulate Seed Longevity in Arabidopsis

Authors: Mazhari Azad, S., Gill Villar, D., Yordan, E., Mestre Pluvinet, P., Forment, J., Tarraga Herrero, S., Gonzalez, C., Ninoles Rodenes, R., Gadea, J.

Date: 2025-10-19 · Version: 1

DOI: 10.1101/2025.10.19.683148

Model Organism: Arabidopsis thaliana

seed longevity maternal environment effect Arabidopsis thaliana temperature and light interaction transcriptome analysis

The Arabidopsis CYSTM α 5'UTR increases protein production from transgenes in plants and bacteria.

Authors: Khanduja, J. S., Wu, X., Searle, I. R.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682649

Model Organism: Arabidopsis thaliana

5'UTR enhancer CYSTM1 transgene expression heterologous expression Arabidopsis thaliana

Leaf-age specific flood resilience in Arabidopsis thaliana is determined by distinct processes contributing to post-submergence recovery

Authors: Rankenberg, T., Sanclemente, M.-A., Zhang, H., Leeggangers, M. A., Devaiah, M., Chao, J., van Veen, H., Theodoulou, F. L., Sasidharan, R.

Date: 2025-10-16 · Version: 1

DOI: 10.1101/2025.10.16.682766

Model Organism: Arabidopsis thaliana

submergence tolerance leaf age‑dependent response Arabidopsis thaliana unfolded protein response mitochondrial voltage‑dependent anion channel

The GT1 domain of RNase J ensures RNA quality control through dsRNA binding in Arabidopsis plastids

Authors: Baudry, K., Skiada, S., Burstein, C., Liveanu, V., Liehrmann, A., Ceminsky, M., Kleifeld, O., Delannoy, E., Launay-Avon, A., Castandet, B., Schuster, G., Stern, D.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682605

Model Organism: Arabidopsis thaliana

RNase J GT1 domain double‑stranded RNA Arabidopsis thaliana chloroplast

The Effect of Plasma Activated Water on the Rhizosphere Composition of Arabidopsis and Solanum lycopersicum

Authors: Kizer, J. J., Allen, X., Robinson, C. D., Grunden, A., Stapelmann, K., Rojas-Pierce, M.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682576

Model Organism: Multi-species

plasma activated water rhizosphere microbiome non-thermal plasma nitrate fertilizer Arabidopsis thaliana

Phosphoproteomics uncovers rapid and specific transition from plant two-component system signaling to Ser/Thr phosphorylation by the intracellular redox sensor AHK5

Authors: Drechsler, T., Li, Z., Schulze, W. X., Harter, K. J. W.

Date: 2025-10-14 · Version: 1

DOI: 10.1101/2025.10.13.682113

Model Organism: Arabidopsis thaliana

AHK5 reactive oxygen species phosphoproteomics Arabidopsis thaliana nanodomain signaling

Transcriptional targets of SPEECHLESS and FAMA control guard cell division and expansion in the late stomatal lineage

Authors: Gonzalez-Suarez, P., Hilbers, Y., Budrys, A., Liu, A., Richter, S., Bergmann, D. C., Smit, M. E.

Date: 2025-10-14 · Version: 1

DOI: 10.1101/2025.10.12.681868

Model Organism: Arabidopsis thaliana

stomatal development SPEECHLESS FAMA transcriptional regulation Arabidopsis thaliana

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

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