Keywords: paralog processing, spatial transcriptomics, ascorbate, phosphorylation

Latest 19 Papers

Spatial transcriptomics of developing wheat seed reveals radial expression patterns in endosperm and subgenome biased expression of key genes

Authors: Millsteed, T., Kainer, D., Sullivan, R., Sun, X., Li, K. L., Mao, L., Macdonald, A., Henry, R. J.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658529

spatial transcriptomics wheat seed development endosperm gene expression subgenome bias STOmics platform

Spatial and single-cell transcriptomics capture two distinct cell states in plant immunity

Authors: Hu, Y., Schaefer, R., Rendleman, M., Slattery, A., Cramer, A., Nahiyan, A., Breitweiser, L., Shah, M., Kaehler, E., Yao, C., Bowling, A., Crow, J., May, G., Tabor, G., Thatcher, S., Uppalapati, S. R., Muppirala, U., Deschamps, S.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657683

Model Organism: Glycine max

spatial transcriptomics single-nuclei RNA-seq plant immunity Phakopsora pachyrhizi cell non‑autonomous defense

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

G3BP1 Phosphorylation Regulates Plant Immunity in Arabidopsis

Authors: Hirt, H., Abdulhakim, F., Abdulfaraj, A., Rayapuram, N.

Date: 2025-05-08 · Version: 1

DOI: 10.1101/2025.05.06.652493

Model Organism: Arabidopsis thaliana

MAPK signaling AtG3BP1 phosphorylation plant immunity stomatal defense

A moss N-Acetyltransferase-MAPK protein controls 2D to 3D developmental transition via acetylation and phosphorylation changes

Authors: de Luxan Hernandez, C., Ammitsoe, T. J., Kanne, J. V., Stanimirovic, S., Roux, M., Weeks, Z., Schutzbier, M., Dürnberger, G., Roitinger, E., Zhang, L., Spadiut, O., Ishikawa, M., Hasebe, M., Moody, L., Dagdas, Y., Rodriguez, E., Petersen, M.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.05.02.650421

Model Organism: Physcomitrium patens

post-translational modifications acetylation phosphorylation 2D-to-3D transition Physcomitrium patens

TIR immune signaling is blocked by phosphorylation to maintain plant growth

Authors: Li, J., Chen, S., Yu, B., Li, Q., Liu, R., Wang, Z., Wan, L., Zhao, Y.

Date: 2025-04-10 · Version: 1

DOI: 10.1101/2025.04.09.647920

Model Organism: Multi-species

TIR domain NADase activity phosphorylation Ca2+-dependent protein kinase growth‑defense trade‑off

B4 Raf-like MAPKKK RAF24 regulates Arabidopsis thaliana flowering time through HISTONE MONO-UBIQUITINATION 2

Authors: Li, Q., Wang, L., Grubb, L. E., Talasila, M., Rodriguez Gallo, M. C., Mehta, D., Scandola, S., Uhrig, R. G.

Date: 2025-04-01 · Version: 2

DOI: 10.1101/2024.06.12.598286

Model Organism: Arabidopsis thaliana

flowering time RAF24 MAPKKK phosphorylation HUB2

N-terminal region of PetD is essential for cytochrome b6f function and controls STT7 kinase activity via STT7-dependent feedback loop phosphorylation

Authors: Zaeem, A., Milrad, Y., Buetfering, S., Stoffel, C., Burlacot, A., Scholz, M., Buchert, F., Hippler, M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.21.639470

Model Organism: Chlamydomonas reinhardtii

cytochrome b6f complex STT7 kinase PetD N‑terminus phosphorylation state transition

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