An NLP-inherited motif confers broad DNA-binding specificity to NIN in root nodule symbiosis
Authors: Nosaki, S., Noda, M., Onoda, H., Ito, M., Suzaki, T.
Date: 2025-07-23 · Version: 1
DOI: 10.1101/2025.07.20.665785Model Organism: Lotus japonicus
Latest 38 Papers
Phenotypic scoring of Canola Blackleg severity using machine learning image analysis
Authors: Hu, Q., Anderson, S. N., Gardner, S., Ernst, T. W., Koscielny, C. B., Bahia, N. S., Johnson, C. G., Jarvis, A. C., Hynek, J., Coles, N., Falak, I., Charne, D. R., Ruidiaz, M. E., Linares, J. N., Mazis, A., Stanton, D. J.
Date: 2025-07-22 · Version: 1
DOI: 10.1101/2025.07.17.665372Model Organism: Multi-species
RegenPGC View: Semantic Segmentation of Perennial Groundcover Cropping Systems to Restore American Croplands
Authors: Meyering, B., Schlautman, B.
Date: 2025-07-06 · Version: 1
DOI: 10.1101/2025.07.03.663038Model Organism: General
Spatial transcriptomics of developing wheat seed reveals radial expression patterns in endosperm and subgenome biased expression of key genes
Authors: Millsteed, T., Kainer, D., Sullivan, R., Sun, X., Li, K. L., Mao, L., Macdonald, A., Henry, R. J.
Date: 2025-06-08 · Version: 1
DOI: 10.1101/2025.06.08.658529Model Organism: Triticum aestivum
Spatial and single-cell transcriptomics capture two distinct cell states in plant immunity
Authors: Hu, Y., Schaefer, R., Rendleman, M., Slattery, A., Cramer, A., Nahiyan, A., Breitweiser, L., Shah, M., Kaehler, E., Yao, C., Bowling, A., Crow, J., May, G., Tabor, G., Thatcher, S., Uppalapati, S. R., Muppirala, U., Deschamps, S.
Date: 2025-06-06 · Version: 1
DOI: 10.1101/2025.06.03.657683Model Organism: Glycine max
Evolutionary origin and functional diversification of plant GBF1-type ARF guanine-nucleotide exchange factors
Authors: Singh, M. K., Lauster, T., Huhn, K., Richter, S., Kientz, M., Neher, R. A., Juergens, G.
Date: 2025-06-06 · Version: 1
DOI: 10.1101/2025.06.03.657657Model Organism: Arabidopsis thaliana
Unraveling the cis-regulatory code controlling abscisic acid-dependent gene expression in Arabidopsis using deep learning
Authors: Opdebeeck, H., Smet, D., Thierens, S., Minne, M., De Beukelaer, H., Zuallaert, J., Van Bel, M., Van Montagu, M., Degroeve, S., De Rybel, B., Vandepoele, K.
Date: 2025-06-06 · Version: 1
DOI: 10.1101/2025.06.03.657584Model Organism: Arabidopsis thaliana
Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development
Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.
Date: 2025-05-11 · Version: 1
DOI: 10.1101/2025.05.09.653223Model Organism: Hordeum vulgare
Deciphering the Sequence Basis and Application of Transcriptional Initiation Regulation in Plant Genomes Through Deep Learning
Authors: Gao, P., Lian, L., Feng, W., Ma, Y., Lin, J., Qin, L., Hao, S., Zhao, H., Liu, X., Yuan, J., Lin, Z., Li, X., Guan, Y., Wang, X.
Date: 2025-04-24 · Version: 1
DOI: 10.1101/2025.04.22.649999Model Organism: Glycine max
Rapid population flux in bacterial spot xanthomonads during a transition in dominance between two genotypes in consecutive tomato production seasons and identification of a new species Xanthomonas oklahomensis sp. nov.
Authors: Johnson, B., Subedi, A., Damicone, J., Goss, E., Jones, J. B., Jibrin, M. O.
Date: 2025-04-16 · Version: 1
DOI: 10.1101/2025.04.13.648550Model Organism: Solanum lycopersicum