Keywords: paralog processing, spatial transcriptomics, high-density SNP array, drought stress

Latest 46 Papers

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.23.689882

Fusarium Head Blight drought stress barley hormone profiling transcriptome analysis

The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress

Authors: Yu, L., Melandri, G., Dittrich, A. C., Calleja, S., Rozzi, B., Ganguly, D. R., Palos, K., Srinivasan, A., Brewer, E. K., Fischer, H., Obata, T., Elgawad, H. A., Beemster, G. T. S., Henderson, R., Garcia, C. D., Zhang, X., Stern, D., Eveland, A., Schroeder, S. J., Skirycz, A., Lyons, E., Arnold, E. A., Gregory, B. D., Nelson, A. D. L., Pauli, D.

Date: 2025-11-24 · Version: 3

DOI: 10.1101/2025.01.17.633510

Model Organism: Arabidopsis thaliana

RNA covalent modifications dihydrouridine (DHU)drought stress photosynthesis RNA stability

Spatiotemporal regulation of arbuscular mycorrhizal symbiosis at cellular resolution

Authors: Chancellor, T., Ferreras-Garrucho, G., Akmakjian, G. Z., Montero, H., Bowden, S. L., Hope, M., Wallington, E., Bhattacharya, S., Korfhage, C., Bailey-Serres, J., Paszkowski, U.

Date: 2025-11-02 · Version: 1

DOI: 10.1101/2025.10.31.685811

Model Organism: Oryza sativa

arbuscular mycorrhizal symbiosis spatial transcriptomics TRAP-seq arbuscule development nutrient transport

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Immunovisualization of spatial changes in leaves and root tissue associated with drought stress in wheat (Triticum aestivum L.)

Authors: Leszczuk, A., Kutyrieva-Nowak, N., Skrzypek, T.

Date: 2025-10-07 · Version: 1

DOI: 10.1101/2025.10.06.680837

Model Organism: General

drought stress immunofluorescence labeling proteoglycans arabinogalactan proteins (AGP)tissue-specific adaptation

Oxidative stress-induced proteolytic activation of polyphenol oxidase triggers an oxidized flavonoids-mediated stress signaling in Camellia sinensis

Authors: Mohapatra, S., Mishra, A., Godara, R., Bali, S., Twinkle,, Kumar, A., Kumar, R., Kumar, N., Kumar, P., Acharya, V., Dogra, V.

Date: 2025-09-25 · Version: 1

DOI: 10.1101/2025.09.23.677533

Model Organism: Camellia sinensis

polyphenol oxidase theaflavins unfolded protein response programmed cell death drought stress

Single-cell-level response to drought in Sorghum bicolor reveals novel targets for improving water use efficiency

Authors: Stata, M., Greenblum, S., Yoshinaga, Y., Koriabine, M., Keymanesh, K., Karia, P., Zhao, C., O'Malley, R. C., Rhee, S. Y.

Date: 2025-08-28 · Version: 1

DOI: 10.1101/2025.08.28.671794

Model Organism: Sorghum bicolor

drought stress Sorghum bicolor single-nucleus RNA sequencing cell-type specific transcription bioenergy crop

Drought drives reversible disengagement of root-mycorrhizal symbiosis

Authors: Akmakjian, G. Z., Nozue, K., Nakayama, H., Borowsky, A. T., Morris, A. M., Baker, K., Canto-Pastor, A., Paszkowski, U., Sinha, N., Brady, S., Bailey-Serres, J.

Date: 2025-08-27 · Version: 1

DOI: 10.1101/2025.08.25.671999

Model Organism: Oryza sativa

drought stress arbuscular mycorrhizal symbiosis Oryza sativa nutrient acquisition regulation re-watering recovery

An Axiom SNP genotyping array for potato: development, evaluation and applications

Authors: Baig, N., Thelen, K., Ayenan, M. A. T., Hartje, S., Obeng-Hinneh, E., Zgadzaj, R., Renner, J., Muders, K., Truberg, B., Rosen, A., Prigge, V., Bruckmueller, J., Luebeck, J., Van Inghelandt, D., Stich, B.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670748

Model Organism: Solanum tuberosum

high-density SNP array potato (Solanum tuberosum)genomic-assisted breeding GWAS polyphenol oxidase activity

Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear

Authors: Qu, Y., Tan, C., Yang, L., Pasquariello, M., Alabdullah, A. K., Sun, S., Iqbal, M., Salamon, J., Boden, S.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.12.670006

Model Organism: Triticum aestivum

spikelet development spatial transcriptomics wheat inflorescence RAMOSA2 ALOG1

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