Keywords: paralog processing, spatial transcriptomics, metabarcoding, transcriptomics, Marchantia polymorpha

Latest 65 Papers

Spatial transcriptomics of developing wheat seed reveals radial expression patterns in endosperm and subgenome biased expression of key genes

Authors: Millsteed, T., Kainer, D., Sullivan, R., Sun, X., Li, K. L., Mao, L., Macdonald, A., Henry, R. J.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658529

spatial transcriptomics wheat seed development endosperm gene expression subgenome bias STOmics platform

Spatial and single-cell transcriptomics capture two distinct cell states in plant immunity

Authors: Hu, Y., Schaefer, R., Rendleman, M., Slattery, A., Cramer, A., Nahiyan, A., Breitweiser, L., Shah, M., Kaehler, E., Yao, C., Bowling, A., Crow, J., May, G., Tabor, G., Thatcher, S., Uppalapati, S. R., Muppirala, U., Deschamps, S.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657683

Model Organism: Glycine max

spatial transcriptomics single-nuclei RNA-seq plant immunity Phakopsora pachyrhizi cell non‑autonomous defense

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Modulation of the GT Family 47 clade B gene affects arabinan deposition in elaters of Marchantia polymorpha

Authors: Kang, H. S. F., Lampugnani, E. R., Tong, X., Prabhakar, P. K., Flores-Sandoval, E., Hansen, J., Jorgensen, B., Bowman, J. L., Urbanowicz, B. R., Ebert, B., Persson, S.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.05.02.651808

Model Organism: Marchantia polymorpha

GT47B arabinosyltransferase 1,5‑linked arabinan Marchantia polymorpha cell wall composition CoMPP

The Building Blocks of Early Land Plants: Glycosyltransferases and Cell Wall Architecture in the model liverwort Marchantia polymorpha

Authors: Kang, H. S. F., Tong, X., Mariette, A., Leong, M., Beahan, C., Flores-Sandoval, E., Pedersen, G., Rautengarten, C., Bowman, J. L., Ebert, B., Bacic, A., Doblin, M., Persson, S., Lampugnani, E. R.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.30.651426

Model Organism: Marchantia polymorpha

Marchantia polymorpha cell wall polysaccharides arabinan glycosyltransferase families comparative genomics

Comparative multi-omics profiling of Gossypium hirsutum and Gossypium barbadense fibers at high temporal resolution reveals key differences in polysaccharide composition and associated glycosyltransferases

Authors: Swaminathan, S., Lee, Y., Grover, C. E., DeTemple, M. F., Mugisha, A. S., Sichterman, L. E., Yang, P., Xie, J., Wendel, J. F., Szymanski, D. B., Zabotina, O. A.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650795

Model Organism: Multi-species

cotton fiber development polysaccharide composition glycome profiling transcriptomics glycosyltransferases

The MpCAFA gene encodes a ciliary protein required for spermatozoid motility in the liverwort Marchantia polymorpha

Authors: MORITA, M., Yamato, K. T.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650577

Model Organism: Marchantia polymorpha

MpCAFA ciliary motility spermatozoid Marchantia polymorpha CAPS/FAP115 domains

The cytochrome P450 enzyme MpCYP78E1 inhibits meristem initiation and activity in Marchantia polymorpha

Authors: Spencer, V., Casey, C., Mosiolek, M., Jandrasits, K., Edelbacher, N., Dolan, L.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.28.651025

Model Organism: Marchantia polymorpha

Marchantia polymorpha meristem activity MpCYP78E1 RNA‑seq branching regulation

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