Keywords: paralog processing, spatial transcriptomics, proteomics, DNA methylation

Latest 43 Papers

Integrative epigenomic analysis uncovers asymmetry of enhancer activity in Brassica napus

Authors: Zanini, S. F., Rockenbach, K., Nguyen, A., Arslan, K., Yildiz, G., Snowdon, R., Golicz, A. A.

Date: 2025-10-31 · Version: 1

DOI: 10.1101/2025.10.31.685802

cis-regulatory elements super-enhancers Brassica napus chromatin accessibility DNA methylation

DNA methylome responses to biotic and abiotic stress in Arabidopsis thaliana: A multi-study analysis

Authors: Behl, R., Gallo-Franco, J. J., Hazarika, R. R., Zhang, Z., Wilming, F., Schnitzler, J.-P., Lindermayr, C., Johannes, F.

Date: 2025-10-20 · Version: 1

DOI: 10.1101/2025.10.20.682861

Model Organism: Arabidopsis thaliana

DNA methylation stress response Arabidopsis thaliana transposable elements epimutations

Guard Cell-Enriched Phosphoproteome Reveals Phosphorylation of Endomembrane Proteins in Closed Stomata

Authors: Pullen, A.-M., Lyons, S., Mordant, A., Herring, L. E., Akpa, B., Rojas-Pierce, M.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682613

Model Organism: General

stomatal aperture guard cells phosphorylation endomembrane trafficking proteomics

Drought-Induced Epigenetic Memory in the cambium of Poplar Trees persists and primes future stress responses

Authors: DUPLAN, A., FENG, Y. Q., LASKAR, G., CAI, B. D., SEGURA, V., DELAUNAY, A., LE JAN, I., DAVIAUD, C., TOUMI, A., LAURANS, F., SOW, M. D., ROGIER, O., POURSAT, P., DURUFLE, H., JORGE, V., SANCHEZ, L., COCHARD, H., ALLONA, I., TOST, J., FICHOT, R., MAURY, S.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.14.681991

Model Organism: Populus spp.

drought stress memory DNA methylation Populus cambium epigenetic priming

Uncovering the Molecular Regulation of Seed Development and Germination in Endangered Legume Paubrasilia echinata Through Proteomic and Polyamine Analyses

Authors: Vettorazzi, R. G., Carrari-Santos, R., Sousa, K. R., Oliveira, T. R., Grativol, C., Olimpio, G., Venancio, T. M., Pinto, V. B., Quintanilha-Peixoto, G., Silveira, V., Santa-Catarna, C.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.13.682162

Model Organism: Paubrasilia echinata

seed maturation proteomics polyamine profiling stress tolerance LEA proteins

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

The seed mitochondrial proteome of Lupinus albus provides insight into energy metabolism during germination

Authors: Angermann, C., Braun, H.-P., Hildebrandt, T. M.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.19.677279

Model Organism: Lupinus albus

seed mitochondria Lupinus albus proteomics oxidative phosphorylation germination

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

Authors: Dupuis, S., Chastain, J. L., Han, G., Zhong, V., Gallaher, S. D., Nicora, C. D., Purvine, S. O., Lipton, M. S., Niyogi, K. K., Iwai, M., Merchant, S. S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.28.672467

Model Organism: Chlamydomonas reinhardtii

photoprotection diurnal light acclimation thylakoid ultrastructure transcriptomics proteomics

Unveiling the molecular identity of plant autophagic compartments: A proteo-lipidomic study in Arabidopsis thaliana

Authors: Lupette, J., Chambaud, C., Buridan, M., Castets, J., Wattelet-Boyer, V., Toboso Moreno, I., Kosuth, T., Yatim, C., Dittrich-Domergue, F., Gros, V., Jouhet, J., Claverol, S., Herice, C., Melser, S., Genva, M., Fouillen, L., Bessoule, J.-J., Domergue, F., Bernard, A.

Date: 2025-08-28 · Version: 1

DOI: 10.1101/2025.08.25.671700

Model Organism: Arabidopsis thaliana

autophagy phagophore membrane proteomics lipidomics membrane remodeling

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