The study combined spatial transcriptomics and single-nuclei RNA sequencing to map soybean (Glycine max) responses to Asian soybean rust caused by Phakopsora pachyrhizi, revealing two distinct host cell states: pathogen‑occupied regions and adjacent non‑infected regions that show heightened defense gene expression. Gene co‑expression network analysis identified a key immune‑related module active in the stressed cells, highlighting a cell‑non‑autonomous defense mechanism.

The study uses an imputation strategy that integrates deep single-cell RNA sequencing with spatial gene expression data to map transcriptional dynamics across barley inflorescence development at cellular resolution. By leveraging the BARVISTA web interface, the authors identify key transcriptional events in meristem founder cells, characterize complex branching mutants, and reconstruct spatio‑temporal trajectories of flower organogenesis, offering insights for targeted trait manipulation.

The study compares iron deficiency and drought tolerance between two soybean genotypes, Clark (tolerant) and Arisoy (sensitive), using multi‑omics analyses. Clark maintains iron homeostasis, higher antioxidant protein expression, and recruits beneficial root microbes (Variovorax, Paecilomyces) that support nutrient uptake and nodule function, while Arisoy shows impaired physiological and microbial responses. The findings identify host‑microbe interactions and specific molecular pathways as potential targets for breeding and microbiome‑based biofertilizers.

The study shows that drought triggers ABA accumulation and JA reduction in sorghum roots, accompanied by transcriptional activation of genes linked to mineral homeostasis, hormone signaling, and osmotic regulation, while Fe supplementation enhances ferritin expression and mitigates oxidative stress. Drought also diminishes root bacterial diversity but enriches beneficial taxa such as Burkholderia, whereas fungal diversity remains stable, and functional profiling reveals shifts toward phototrophy, methylotrophy, and nitrate reduction. These findings highlight ferritin’s protective role and suggest specific bacterial inoculants for improving sorghum drought resilience.