Keywords: paralog processing, spatial transcriptomics, stress response

Latest 17 Papers

Integrative transcriptomic and phosphoproteomic analysis reveals key components of SnRK1 signaling network in rice

Authors: Faria-Bates, M. C., Maurya, C., Jamsheer K, M., Srivastava, V.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.22.666209

Model Organism: Oryza sativa

SnRK1 rice CRISPR/Cas9 phosphoproteomics stress response

An allelic resolution gene atlas for tetraploid potato provides insights into tuberization and stress resilience

Authors: Brose, J., Martin, D., Wang, Y.-W., Wood, J. C., Vaillancourt, B., Hamilton, J. P., Buell, C. R.

Date: 2025-06-27 · Version: 1

DOI: 10.1101/2025.06.26.661617

Model Organism: Solanum tuberosum

tuberization gene expression atlas coexpression modules stress response tetraploid potato

Spatial transcriptomics of developing wheat seed reveals radial expression patterns in endosperm and subgenome biased expression of key genes

Authors: Millsteed, T., Kainer, D., Sullivan, R., Sun, X., Li, K. L., Mao, L., Macdonald, A., Henry, R. J.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658529

Model Organism: Triticum aestivum

spatial transcriptomics wheat seed development endosperm gene expression subgenome bias STOmics platform

Spatial and single-cell transcriptomics capture two distinct cell states in plant immunity

Authors: Hu, Y., Schaefer, R., Rendleman, M., Slattery, A., Cramer, A., Nahiyan, A., Breitweiser, L., Shah, M., Kaehler, E., Yao, C., Bowling, A., Crow, J., May, G., Tabor, G., Thatcher, S., Uppalapati, S. R., Muppirala, U., Deschamps, S.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657683

Model Organism: Glycine max

spatial transcriptomics single-nuclei RNA-seq plant immunity Phakopsora pachyrhizi cell non‑autonomous defense

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Tomato Omics Research: Mapping Bibliometric Footprints of Global Research Trends, Collaboration Networks, and Impact Trajectories

Authors: Prabha, R., Kumar, A., Shukla, R., Singh, D. P.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.17.649284

Model Organism: Solanum lycopersicum

tomato omics bibliometric analysis microRNA stress response

Elucidating tissue and sub-cellular specificity of the entire SUMO network reveals how stress responses are fine-tuned in a eukaryote

Authors: Sadanandom, A., Banda, J., Ghosh, S., Roy, D., Bishopp, A., Jones, A., Sharma, E., Sue-Ob, K., Clark, L., Band, L. R., Lilley, K. S., Bennett, M. J., Ingole, K., De Lucas, M., Bhosale, R.

Date: 2025-04-08 · Version: 1

DOI: 10.1101/2025.04.08.647708

Model Organism: Arabidopsis thaliana

SUMOylation Arabidopsis root cell atlas stress response tissue-specific regulation

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