Keywords: paralog processing, spatial transcriptomics, transcriptome, Arabidopsis thaliana

Latest 254 Papers

Plant-specific adaptations of the CDC48 unfoldase

Authors: Huntington, B., Sandholu, A., Wang, J., Zhang, J., Zhao, L., Qureshi, B. M., Shahul Hameed, U. F., Arold, S. T.

Date: 2025-03-31 · Version: 1

DOI: 10.1101/2025.03.28.645892

Model Organism: Arabidopsis thaliana

CDC48A Arabidopsis thaliana protein degradation UFD1 NPL4

Misregulation of the jasmonate signaling pathway leads to altered plant microbiota interaction and plant stress responses

Authors: Lu, T.-T., Isip, M., Shih, H.-J. S., Perin, S., Ma, K.-W.

Date: 2025-03-31 · Version: 1

DOI: 10.1101/2025.03.29.646076

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana plant microbiota jasmonate signaling dysbiosis synthetic bacterial community

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

TOC1 phosphorylation disproportionally enhances chromatin binding at rhythmic gene promoters

Authors: Yan, J., Zhang, Y., Chen, G., Gui, C., Tu, Z., Cao, D., Li, X., Somers, D. E.

Date: 2025-03-27 · Version: 2

DOI: 10.1101/2025.01.09.632189

Model Organism: Arabidopsis thaliana

TOC1 phosphorylation circadian clock Arabidopsis thaliana CCA1 repression chromatin occupancy

Next-Generation Mapping of the ACINUS-Mediated Alternative Splicing Machinery and Its Regulation by O-glycosylation in Arabidopsis

Authors: Shrestha, R., Reyes, A. V., Carey, S., Karunadasa, S. S., Zhai, W., Byun, D., Lin, W.-D., Li, J., Alerte, K., Cui, H., Wang, Z.-Y., Xu, S.-L.

Date: 2025-03-26 · Version: 2

DOI: 10.1101/2025.01.04.631329

Model Organism: Arabidopsis thaliana

alternative splicing TurboID proximity labeling O-glycosylation Arabidopsis thaliana splicing factor ACINUS

Canalization of flower production across thermal environments requires Florigen and CLAVATA signaling.

Authors: Smith, E. S., John, A., Willoughby, A. C., Jones, D. S., Galvao, V. C., Fankhauser, C., Nimchuk, Z. L.

Date: 2025-03-25 · Version: 1

DOI: 10.1101/2025.03.23.644808

Model Organism: Arabidopsis thaliana

canalization florigen CLAVATA signaling temperature stress Arabidopsis thaliana

Age-dependent differential iron deficiency responses of rosette leaves during reproductive stages in Arabidopsis thaliana

Authors: Ngigi, M., Khan, M., Remus, R., Gupta, S., Bauer, P.

Date: 2025-03-21 · Version: 2

DOI: 10.1101/2024.11.28.625839

Model Organism: Arabidopsis thaliana

iron deficiency Arabidopsis thaliana reproductive stages leaf ionomics gene expression

Broad application of plant protein tagging with ALFA tag for nanobody-based imaging and biochemical approaches

Authors: Neveu, J., Spielmann, J., Fanara, S., Delesalle, C., Cantaloube, S., Vert, G.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.19.644120

Model Organism: Arabidopsis thaliana

ALFA tag ALFA Nanobody protein detection Arabidopsis thaliana super‑resolution microscopy

Cell-type specific autophagy in root hair forming cells is essential for salt stress tolerance in Arabidopsis thaliana

Authors: Zhao, J., Loefke, C., Yeung, K. C., Chen, Y., Dagdas, Y.

Date: 2025-03-18 · Version: 1

DOI: 10.1101/2025.03.18.643786

Model Organism: Arabidopsis thaliana

autophagy trichoblast Arabidopsis thaliana salt stress cell-type-specific regulation

PWO proteins are associated with PRC2 since their emergence in vascular plants

Authors: Khan, A., Haider, S., Sharaf, A., Kusova, A., Skalak, J., Jourdain, C., Rennie, M., Schrumpfova, P. P., Hejatko, J., Schubert, D., Farrona, S., Mozgova, I.

Date: 2025-03-17 · Version: 1

DOI: 10.1101/2025.03.15.643013

Model Organism: Arabidopsis thaliana

PWO1 Polycomb Repressive Complex 2 Arabidopsis thaliana evolutionary conservation C‑terminal alpha‑helix (c‑motif)

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