Keywords: paralog processing, spatial transcriptomics, transcriptome, Arabidopsis thaliana

Latest 254 Papers

The Arabidopsis TIRome informs the design of artificial TIR (Toll/interleukin-1 receptor) domain proteins

Authors: Bayless, A. M., Song, L., Sorbello, M., Ogden, S. C., Todd, T. S., Flint, A., Maruta, N., Tulu, J., Drenichev, M., Ntoukakis, V., Ve, T., Mobli, M., Wan, L., Liu, Q., Dangl, J. L., Kobe, B., Grant, M., Nishimura, M. T.

Date: 2025-03-17 · Version: 1

DOI: 10.1101/2025.03.15.643477

Model Organism: Arabidopsis thaliana

TIR domain Arabidopsis thaliana immune signaling BB‑loop synthetic TIR engineering

Fast activated outward cation channel activation allows H+-ATPase and anion channel reactivation upon strong depolarization in young root hairs of Arabidopsis thaliana

Authors: Bouteau, f., Reboutier, D., Dauphin, A.

Date: 2025-03-14 · Version: 1

DOI: 10.1101/2025.03.14.643228

Model Organism: Arabidopsis thaliana

root hair ion transport plasma membrane outward current voltage clamp Arabidopsis thaliana

Two distinct oscillatory auxin signals define the plasticity of lateral rooting in Arabidopsis thaliana

Authors: Ren, C., Bodendorf, J., Moreno-Risueno, M. A., Kleine-Vehn, J.

Date: 2025-03-14 · Version: 2

DOI: 10.1101/2024.08.16.608248

Model Organism: Arabidopsis thaliana

auxin oscillations lateral root pre‑branch sites Arabidopsis thaliana light signaling environmental integration

Delay in flowering time in Col-0 under water deficit and in ddc triple knockout mutant

Authors: Vatov, E., Gechev, T.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.11.642597

Model Organism: Arabidopsis thaliana

cytosine methylation flowering time water deficit Arabidopsis thaliana BBX16/BBX17

Cysteine signaling in plant pathogen response

Authors: Moormann, J., Heinemann, B., Angermann, C., Koprivova, A., Armbruster, U., Kopriva, S., Hildebrandt, T. M.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.13.642987

Model Organism: Arabidopsis thaliana

cysteine homeostasis plant immune signaling proteome response Arabidopsis thaliana Pseudomonas syringae

Designer antisense circRNAGFP reduces GFP protein abundance in Arabidopsis protoplasts in a sequence-specific manner, independent of RNAi pathways

Authors: Hossain, M., Pfafenroth, C., Nasfi, S., Sede, A. R., Imani, J., Secic, E., Galli, M., Schaefer, P., Bindereif, A., Heinlein, M., Ladera, M., Kogel, K.-H.

Date: 2025-03-12 · Version: 2

DOI: 10.1101/2023.11.20.567890

Model Organism: Arabidopsis thaliana

circular RNA Arabidopsis thaliana targeted gene regulation RNAi‑independent pattern‑triggered immunity

Powdery mildew exploits host plastoglobuli functions via DGAT3 and FBN2 for proliferation

Authors: Xue, H., Kemmer, C. R., Choi, E. H., Iwai, M., Niyogi, K. K., Wildermuth, M. C.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.04.641535

Model Organism: Arabidopsis thaliana

plastoglobuli powdery mildew Arabidopsis thaliana Fibrillin 2 (FBN2)effector interaction

An affordable and non-invasive validated machine-aided phenotyping pipeline identifies phenotypic variation of stress resilience in alkaline calcareous soil across the life cycle in Arabidopsis thaliana

Authors: Knopf, M., Bauer, P.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.02.641020

Model Organism: Arabidopsis thaliana

Alkaline calcareous soil Arabidopsis thaliana PlantEye multispectral phenotyping Rostette size Leaf chlorosis

High and low exogenous nitrate concentrations produce distinct calcium signatures in Arabidopsis roots

Authors: Shrivastava, S., Singh, D., Zielinski, R. E., Marshall-Colon, A.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.03.641058

Model Organism: Arabidopsis thaliana

calcium signaling nitrate response Arabidopsis thaliana root hair calcium dynamics GCaMP6s imaging

Production of homozygous deletion mutants targeting fertilization regulator genes through multiplex genome editing

Authors: Yoshimura, A., Seo, Y., Kobayashi, S., Igawa, T.

Date: 2025-03-06 · Version: 1

DOI: 10.1101/2025.02.28.640930

Model Organism: Arabidopsis thaliana

CRISPR/Cas9 multiplex guide RNAs gene knockout Arabidopsis thaliana fertilization regulators

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