Keywords: paralog processing, transcriptome, SUMOylation

Latest 7 Papers

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis

Authors: Coleman, D., Iwase, A., Kawamura, A., Takebayashi, A., Jaeger, K. E., Peng, M., Kodama, Y., Favero, D. S., Takahashi, T., Ikeuchi, M., Suzuki, T., Ohama, N., Yamaguchi-Shinozaki, K., Wigge, P. A., De Veylder, L., Sugimoto, K.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679115

Model Organism: Arabidopsis thaliana

HSFA1 transcription factors wound-induced regeneration callus formation RNA-seq SUMOylation

Ubiquitin-like SUMO protease expansion in rice (Oryza sativa)

Authors: Sue-ob, K., Zhang, C., Sharma, E., Bhosale, R., Sadanandom, A., Jones, A. R.

Date: 2025-08-25 · Version: 1

DOI: 10.1101/2025.08.20.671006

Model Organism: Oryza sativa

SUMOylation ULP proteases Oryza sativa phylogenetic analysis stress response

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

Elucidating tissue and sub-cellular specificity of the entire SUMO network reveals how stress responses are fine-tuned in a eukaryote

Authors: Sadanandom, A., Banda, J., Ghosh, S., Roy, D., Bishopp, A., Jones, A., Sharma, E., Sue-Ob, K., Clark, L., Band, L. R., Lilley, K. S., Bennett, M. J., Ingole, K., De Lucas, M., Bhosale, R.

Date: 2025-04-08 · Version: 1

DOI: 10.1101/2025.04.08.647708

Model Organism: Arabidopsis thaliana

SUMOylation Arabidopsis root cell atlas stress response tissue-specific regulation

Regulation of brassinosteroid signaling through Arabidopsis transcription factor TCP8 by a conserved post-translational mechanism

Authors: Spears, B. J., Mozal, R., Magnabosco, S. A., Beauford, N. M., Baker, N. C., Voeglie, Q., Gassmann, W.

Date: 2025-01-31 · Version: 1

DOI: 10.1101/2025.01.30.635591

Model Organism: Arabidopsis thaliana

SUMOylation TCP transcription factors post‑translational modification Arabidopsis thaliana phytohormone stress response

Transcriptome responses of two Halophila stipulacea seagrass populations from pristine and impacted habitats, to single and combined thermal and excess nutrient stressors, reveal local adaptive features and core stress-response genes

Authors: Nguyen, H. M., Yaakov, B., Beca-Carretero, P., Procaccini, G., Wang, G., Dassanayake, M., Winters, G., Barak, S.

Date: 2025-01-27 · Version: 2

DOI: 10.1101/2025.01.21.634158

Model Organism: Halophila stipulacea

Halophila stipulacea thermal stress nutrient stress combined stressors transcriptome