Keywords: paralog processing, transcriptome, alternative splicing, autophagy

Latest 30 Papers

A network of RS splicing regulatory proteins controls light-dependent splicing and seedling development

Authors: Saile, J., Walter, H., Denecke, M., Lederer, P., Schuetz, L., Hiltbrunner, A., Lepp, K., Lobato-Gil, S., Beli, P., Wachter, A.

Date: 2025-04-08 · Version: 1

DOI: 10.1101/2025.04.07.646831

Model Organism: Arabidopsis thaliana

photomorphogenesis alternative splicing phospho-proteomics RS (SR) proteins Arabidopsis thaliana

Chemical Inhibition of Splicing-Related Protein Kinases Reveals Phosphorylation-Driven Regulation of RNA Alternative Splicing in Arabidopsis Seedlings

Authors: Rodriguez Gallo, M. C., Murray, C., Kennedy, C., Talasila, M., Bhatt, D., Steyer, J., Glover, M., Uhrig, R. G.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.24.644839

Model Organism: Arabidopsis thaliana

SR protein kinases alternative splicing root development chemical inhibition phosphoproteomics

Next-Generation Mapping of the ACINUS-Mediated Alternative Splicing Machinery and Its Regulation by O-glycosylation in Arabidopsis

Authors: Shrestha, R., Reyes, A. V., Carey, S., Karunadasa, S. S., Zhai, W., Byun, D., Lin, W.-D., Li, J., Alerte, K., Cui, H., Wang, Z.-Y., Xu, S.-L.

Date: 2025-03-26 · Version: 2

DOI: 10.1101/2025.01.04.631329

Model Organism: Arabidopsis thaliana

alternative splicing TurboID proximity labeling O-glycosylation Arabidopsis thaliana splicing factor ACINUS

Root hair lifespan is antagonistically controlled by autophagy and programmed cell death

Authors: Feng, Q., Zhu, S., Wang, X., Liu, Y., Zhao, J., Dagdas, Y., Nowack, M. K.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.18.643910

Model Organism: Arabidopsis thaliana

root hair longevity autophagy ATG2 ATG5 ATG7 NAC transcription factors programmed cell death

Cell-type specific autophagy in root hair forming cells is essential for salt stress tolerance in Arabidopsis thaliana

Authors: Zhao, J., Loefke, C., Yeung, K. C., Chen, Y., Dagdas, Y.

Date: 2025-03-18 · Version: 1

DOI: 10.1101/2025.03.18.643786

Model Organism: Arabidopsis thaliana

autophagy trichoblast Arabidopsis thaliana salt stress cell-type-specific regulation

Bacteria use processing body condensates to attenuate host translation during infection

Authors: Gonzalez-Fuente, M., Schulz, N., Abdrakhmanov, A., Izzati, G., Zhu, S., Langin, G., Gouguet, P., Franz-Wachtel, M., Macek, B., Hafren, A., Dagdas, Y., Üstün, S.

Date: 2025-03-11 · Version: 2

DOI: 10.1101/2025.01.09.632196

Model Organism: General

Pseudomonas syringae processing bodies translation attenuation ER stress response autophagy

Melatonin-mediated methylglyoxal homeostasis and regulation of autophagy during seed germination under PEG-induced drought stress in upland cotton

Authors: Dake, D., Laha, S., Kumar, A., Gudipalli, P.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.18.638685

Model Organism: Gossypium hirsutum

melatonin priming methylglyoxal detoxification drought stress autophagy glyoxalase system

Lack of AtMC1 catalytic activity triggers autoimmunity dependent on NLR stability

Authors: Salguero-Linares, J., Armengot, L., Ayet, J., Ruiz-Solani, N., Saile, S., Salas-Gomez, M., Fernandez, E., Denolf, L., Navarrete, F., Krumbach, J., Kaiser, M., Stael, S., Van Breusegem, F., Gevaert, K., Kaschani, F., petersen, m., El Kasmi, F., Valls, M., Coll, N. S.

Date: 2025-02-03 · Version: 1

DOI: 10.1101/2025.01.31.635913

Model Organism: Arabidopsis thaliana

metacaspase 1 autoimmunity NLR homeostasis SNIPER1 autophagy

Cotyledon opening during seedling deetiolation is determined by ABA-mediated splicing regulation

Authors: Martin, G., Larran, A., Questa, J. I., Duque, P.

Date: 2025-01-31 · Version: 1

DOI: 10.1101/2025.01.29.635410

Model Organism: Arabidopsis thaliana

abscisic acid cotyledon opening deetiolation alternative splicing RS40 RS41

Transcriptome responses of two Halophila stipulacea seagrass populations from pristine and impacted habitats, to single and combined thermal and excess nutrient stressors, reveal local adaptive features and core stress-response genes

Authors: Nguyen, H. M., Yaakov, B., Beca-Carretero, P., Procaccini, G., Wang, G., Dassanayake, M., Winters, G., Barak, S.

Date: 2025-01-27 · Version: 2

DOI: 10.1101/2025.01.21.634158

Model Organism: Halophila stipulacea

Halophila stipulacea thermal stress nutrient stress combined stressors transcriptome

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